View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_41 (Length: 265)
Name: NF0943_low_41
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 17577551 - 17577749
Alignment:
| Q |
30 |
acgaacaaatagagaagctacaaataacagacaaaaataaaatccaagtggaaacaccttctgaaacaccttattgacgacaaggctccacggcgccaac |
129 |
Q |
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| T |
17577551 |
acgaacaaatagaaaagctacaaataacaaacaaaaataaaatccaagcggaaacaccctctgaaacaccttattgccgacaaggctccacggcgcaaac |
17577650 |
T |
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| Q |
130 |
aaactccaactccaacctgagaaagaggaaaggaaacaacaacacctacaagaacgaccaagagtggatcaccagccacccaaagtcagagtgatcgaag |
229 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577651 |
aaactacaactccaacctgagaaagaggaaagga---aacaacacctacaagaacgaccaagagtggatcaccagccacccaaagtcagagtgatcgaag |
17577747 |
T |
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