View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0943_low_43 (Length: 264)
Name: NF0943_low_43
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_43 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 29772444 - 29772209
Alignment:
| Q |
1 |
gaaacagtagcactggaagccaacgtaaatgtgaatatgtgata-tttaagaatttcaaatatgtattttccatccct-----nnnnnnnnnnntatgta |
94 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | ||| |
|
|
| T |
29772444 |
gaaacagcagcactggaagccaacgtaaatgtgaatatgtgataatttaaga-tttcaaatatgtattttccatccctcaaaaaaaaaaaaaaaaaagta |
29772346 |
T |
|
| Q |
95 |
ttttccaatttacaaaaatt-aatacaattatcc-ttcnnnnnnnntgaaatactattattgtttnnnnnnnnntgaaagactattatgacctatgctta |
192 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| || ||||||||||||||||||| |||||||| |||||||||||| ||| |
|
|
| T |
29772345 |
ttttccaatttacaaaaattaaacacaattatccttttaaaaaaaatgaaatactattattgttt-aagaaaaatgaaagaccattatgacctatattta |
29772247 |
T |
|
| Q |
193 |
taattgcgattagtaattttcatattcaatcttatatt |
230 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29772246 |
taattgcgattaataattttcatattcaatcttatatt |
29772209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University