View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_47 (Length: 262)
Name: NF0943_low_47
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 29772444 - 29772209
Alignment:
| Q |
1 |
gaaacagtagcactggaagccaacgtaaatgtgaatatgtgata-tttaagaatttcaaatatgtattttccatccct------nnnnnnnnnntatgta |
93 |
Q |
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| T |
29772444 |
gaaacagcagcactggaagccaacgtaaatgtgaatatgtgataatttaaga-tttcaaatatgtattttccatccctcaaaaaaaaaaaaaaaaaagta |
29772346 |
T |
|
| Q |
94 |
ttttccaatttacaaaaatt-aatacaattatcc-ttcnnnnnnnntgaaatactattattgtttnnnnnnnntgaaagactattatgacctatgcttat |
191 |
Q |
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|||||||||||||||||||| || |||||||||| || ||||||||||||||||||| |||||||| |||||||||||| |||| |
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| T |
29772345 |
ttttccaatttacaaaaattaaacacaattatccttttaaaaaaaatgaaatactattattgtttaagaaaaatgaaagaccattatgacctatatttat |
29772246 |
T |
|
| Q |
192 |
aattgcgattagtaattttcatattcaatcttatatt |
228 |
Q |
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||||||||||| ||||||||||||||||||||||||| |
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| T |
29772245 |
aattgcgattaataattttcatattcaatcttatatt |
29772209 |
T |
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