View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_low_50 (Length: 258)

Name: NF0943_low_50
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0943_low_50
NF0943_low_50
[»] chr4 (2 HSPs)
chr4 (1-83)||(51358183-51358265)
chr4 (153-229)||(51358335-51358411)
[»] chr3 (1 HSPs)
chr3 (12-79)||(32908574-32908641)
[»] chr5 (2 HSPs)
chr5 (1-65)||(12167260-12167324)
chr5 (1-80)||(14537246-14537325)
[»] chr6 (4 HSPs)
chr6 (1-63)||(2425310-2425372)
chr6 (1-65)||(2428625-2428689)
chr6 (26-79)||(7088922-7088975)
chr6 (26-79)||(8803339-8803392)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 51358183 - 51358265
Alignment:
Q  1 atcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaagttt 83  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51358183 atcaaaggagtagtaatcccttgctcttgtttcccaagctttaaagtaggtctctgtataatccatccatcttttcgaagttt 51358265  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 51358335 - 51358411
Alignment:
Q  153 tatattaacatcaaacttaatgatggttgacgggattaactcttgaaaatggaaagaggaagatggaagatatgata 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51358335 tatattaacatcaaacttaatgatggttgacgggattaactcttgaaaatggaaagaggaagatggaagatatgata 51358411  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 32908641 - 32908574
Alignment:
Q  12 agtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 79  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||    
T  32908641 agtaatcccctgctcttgtttcccaagcttcaaagtagatctctgtataatccagacatcatttcgaa 32908574  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12167324 - 12167260
Alignment:
Q  1 atcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatcca 65  Q
    |||||||||||||||||| | |||||||| || |||||||||||||||||||| |||||||||||    
T  12167324 atcaaaggagtagtaatctcatgctcttgctttccaagcttcaaagtaggtctttgtataatcca 12167260  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 14537325 - 14537246
Alignment:
Q  1 atcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaag 80  Q
    |||||||||| | |||||| |||||||||||| ||||| |||||||||| |||| ||| ||||||  |||| ||||||||    
T  14537325 atcaaaggagcaataatccattgctcttgttttccaagtttcaaagtagatctccgtaaaatccactcatcatttcgaag 14537246  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2425310 - 2425372
Alignment:
Q  1 atcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatc 63  Q
    ||||||| |||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||    
T  2425310 atcaaagaagtagtaatctcttgctcctgtctccccagcttcaaagtaggtctctgtataatc 2425372  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2428625 - 2428689
Alignment:
Q  1 atcaaaggagtagtaatcccttgctcttgtttcccaagcttcaaagtaggtctctgtataatcca 65  Q
    ||||||| ||| ||||||| |||||||||| |||| |||||| |||||||||| |||||||||||    
T  2428625 atcaaagaagttgtaatcctttgctcttgtctccctagcttcgaagtaggtctttgtataatcca 2428689  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 7088975 - 7088922
Alignment:
Q  26 cttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 79  Q
    ||||| ||||||||||||||||||||||| | |||||||| || || |||||||    
T  7088975 cttgtctcccaagcttcaaagtaggtctccgcataatccacccgtcatttcgaa 7088922  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 8803339 - 8803392
Alignment:
Q  26 cttgtttcccaagcttcaaagtaggtctctgtataatccatccatcttttcgaa 79  Q
    ||||| ||||||||||||||||||||||| | |||||||| || || |||||||    
T  8803339 cttgtctcccaagcttcaaagtaggtctccgaataatccacccgtcatttcgaa 8803392  T

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