View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_low_52 (Length: 252)

Name: NF0943_low_52
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0943_low_52
NF0943_low_52
[»] chr3 (3 HSPs)
chr3 (30-142)||(36038834-36038946)
chr3 (30-80)||(36008907-36008957)
chr3 (206-252)||(36038722-36038768)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 36038946 - 36038834
Alignment:
Q  30 aaagggtctcccattattatcattgaagctccaaagatgatcaaaactgcagcttctgtcccttgcctcagagttaattctggcttagtcaaacctggtg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36038946 aaagggtctcccattattatcattgaagctccaaagatgatcaaaactgcagcttctgtcccttgcctcagagttaattctggcttagtcaaacctggtg 36038847  T
Q  130 atgttggaaggta 142  Q
    |||||||||||||    
T  36038846 atgttggaaggta 36038834  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 36008957 - 36008907
Alignment:
Q  30 aaagggtctcccattattatcattgaagctccaaagatgatcaaaactgca 80  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36008957 aaagggtctcccattattatcattgaagctcgaaagatgatcaaaactgca 36008907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 36038768 - 36038722
Alignment:
Q  206 cacactagcactatttgatttggtaaaatctaaaatatccaattaat 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36038768 cacactagcactatttgatttggtaaaatctaaaatatccaattaat 36038722  T

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