View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_54 (Length: 251)
Name: NF0943_low_54
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 8722217 - 8721984
Alignment:
| Q |
5 |
accccaatatgtcaattggagatatcagagagaggtgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggt |
104 |
Q |
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| T |
8722217 |
accccaatatgtcaattggagatatcagagagaggtgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggt |
8722118 |
T |
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| Q |
105 |
ttaatttatcataatgtcccttaaatttgtttctctaatgaaatgtgagtatacttttcaac--atagtaatatacttttattgttacattcagacgtct |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8722117 |
ttaatttatcataatgtcccttaaatttgtttctctaatgaaatgtgagtatacttttcaacatatagtaatatacttttattgttacattcagacgtct |
8722018 |
T |
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| Q |
203 |
aagaggaacattacagattgtgaaaaagttcatc |
236 |
Q |
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| T |
8722017 |
aagaggaacattacagattgtgaaaaagttcatc |
8721984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 8594045 - 8593812
Alignment:
| Q |
5 |
accccaatatgtcaattggagatatcagagagaggtgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggt |
104 |
Q |
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| T |
8594045 |
accccaatatgtcaattggagatattgcagagaggtgcccattttgtcgtaagaattgcaattgcaatgtttgcttgtgttcaagaggaatgatcaaggt |
8593946 |
T |
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| Q |
105 |
ttaatttatcata--atgtcccttaaatttgtttctctaatgaaatgtgagtatacttttcaacatagtaatatacttttattgttacattcagacgtct |
202 |
Q |
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| T |
8593945 |
ttaatttattatataatgtcccttaaatttgtttgtctaatgaaatgtgagtatacttttcaatttagtaatataattttattggtacattcagacgtct |
8593846 |
T |
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| Q |
203 |
aagaggaacattacagattgtgaaaaagttcatc |
236 |
Q |
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| T |
8593845 |
aacaggaacataacagattgtgaaaaagttcatc |
8593812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 8677327 - 8677153
Alignment:
| Q |
68 |
gcaatgtttgcttgggttcaagaggaatgatcaaggtttaatttatcataat------gtcccttaaatttgtttctctaatgaaatgtgagtatacttt |
161 |
Q |
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|||||||||||||| |||| ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8677327 |
gcaatgtttgcttgtgttccagaggaatgatcaaggtgtcatttatcataatcataatgtcccttaaatttgtttctctaatgaaacgtgagtatacttt |
8677228 |
T |
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| Q |
162 |
tcaacatagtaatatacttttattgttacattcagacgtctaagaggaacattacagattgtgaaaaagttcatc |
236 |
Q |
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| T |
8677227 |
tcaacttagtaatataattttattgttacattcagacgtctaacaagaacatcacagattgtgaaaaagttcatc |
8677153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 21239832 - 21239942
Alignment:
| Q |
5 |
accccaatatgtcaattggagatatcagagagaggtgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggt |
104 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| || |
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| T |
21239832 |
accccaatatgtcagttggagatatcggagagaggtgccccttttgctgtaagaattggaattgcaatgtttgcttgtgttcaagaggaatgatcaaagt |
21239931 |
T |
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| Q |
105 |
ttaatttatca |
115 |
Q |
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| T |
21239932 |
ttaatttatca |
21239942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 55413237 - 55413165
Alignment:
| Q |
40 |
tgccccttttgccgtaagaattgcaattgcaatgtttgcttgggttcaagaggaatgatcaaggtttaattta |
112 |
Q |
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| T |
55413237 |
tgcccattttgcattaaaaattgcaattgcaatgtttgcctgcgttcaaaaggaacaattaaggtttacttta |
55413165 |
T |
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