View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_58 (Length: 242)
Name: NF0943_low_58
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_58 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 36038946 - 36038808
Alignment:
| Q |
30 |
aaagggtctcccattattatcattgaagctccaaagatgatcaaaactgcagcttctgtcccttgcctcagagttaattctggcttagtcaaacctggtg |
129 |
Q |
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| T |
36038946 |
aaagggtctcccattattatcattgaagctccaaagatgatcaaaactgcagcttctgtcccttgcctcagagttaattctggcttagtcaaacctggtg |
36038847 |
T |
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| Q |
130 |
atgttggaaggtatttcacctcatcttttaagttttcat |
168 |
Q |
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| T |
36038846 |
atgttggaaggtatttcacctcatcttttaagttttcat |
36038808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 36008957 - 36008907
Alignment:
| Q |
30 |
aaagggtctcccattattatcattgaagctccaaagatgatcaaaactgca |
80 |
Q |
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| T |
36008957 |
aaagggtctcccattattatcattgaagctcgaaagatgatcaaaactgca |
36008907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 36008886 - 36008822
Alignment:
| Q |
104 |
taattctggcttagtcaaacctggtgatgttggaaggtatttcacctcatcttttaagttttcat |
168 |
Q |
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| T |
36008886 |
taattttggcttatacaaacgtggtgatgttggaaggtattttgcctcatctcttaatttttcat |
36008822 |
T |
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