View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_59 (Length: 228)
Name: NF0943_low_59
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 36465150 - 36465249
Alignment:
| Q |
1 |
atcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatcatgccttcaccaaac |
100 |
Q |
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| T |
36465150 |
atcatagtcaatcacaggcaggtcaagtgttgggtgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatcatgccttcaccaaac |
36465249 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36474328 - 36474422
Alignment:
| Q |
1 |
atcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatcatgccttcac |
95 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
36474328 |
atcatagtcaatcacaggcaggtcaagtgttgggtgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcatgacttcac |
36474422 |
T |
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