View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0943_low_7 (Length: 510)

Name: NF0943_low_7
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0943_low_7
NF0943_low_7
[»] chr8 (3 HSPs)
chr8 (275-468)||(27560309-27560499)
chr8 (89-210)||(27560564-27560685)
chr8 (138-206)||(31038204-31038272)
[»] chr7 (3 HSPs)
chr7 (7-95)||(23861027-23861115)
chr7 (130-192)||(26605774-26605836)
chr7 (130-170)||(19199174-19199214)
[»] chr3 (3 HSPs)
chr3 (115-188)||(1540361-1540434)
chr3 (132-170)||(26815208-26815246)
chr3 (115-188)||(1543672-1543745)
[»] chr4 (1 HSPs)
chr4 (144-187)||(24179331-24179374)
[»] chr5 (2 HSPs)
chr5 (130-170)||(29451354-29451394)
chr5 (122-170)||(30580936-30580984)


Alignment Details
Target: chr8 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 275 - 468
Target Start/End: Complemental strand, 27560499 - 27560309
Alignment:
Q  275 aaacactgtcatcttcttcttgttttacattacaggagaatcttggttttgttttcaggacatgacttgtcctcataatttgtgttttccttcgaaagca 374  Q
    ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27560499 aaacactgtcatct---tcttgttttacattacaggagaatcttggttttgttttcaggacatgacttgtcctcataatttgtgttttccttcgaaagca 27560403  T
Q  375 gtttgtattagctctcaatgtatatgcgtctaacttttacagttaagttcaaagttcattttatgttatttataagcctatagttttatttaca 468  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  27560402 gtttgtattagctctcaatgtatatgcatctaacttttacagttaagttcaaagttcattttatgttatttacaagcttatagttttatttaca 27560309  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 89 - 210
Target Start/End: Complemental strand, 27560685 - 27560564
Alignment:
Q  89 aacatttaatgtttgttacatctaatggagaataataagactgaaattattaagtttgtttatgttatgatcatatttatttttgtattttttgatgtaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27560685 aacatttaatgtttgttacatctaatggagaataataagaccgaaattattaagtttgtttatgctatgatcatatttatttttgtattttttgatgtaa 27560586  T
Q  189 gtgatgtaatcgctggtaagcc 210  Q
    ||||||||||||||||||||||    
T  27560585 gtgatgtaatcgctggtaagcc 27560564  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 31038204 - 31038272
Alignment:
Q  138 ttaagtttgtttatgttatgatcatatttatttttgtattttttgatgtaagtgatgtaatcgctggta 206  Q
    ||||||||||||||| ||||||||| || |||| | ||||||||| |||||| || |||| ||||||||    
T  31038204 ttaagtttgtttatggtatgatcattttgatttctctattttttgctgtaagggacgtaagcgctggta 31038272  T

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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 23861027 - 23861115
Alignment:
Q  7 acaatctgatcatttattagtaaatttttatgttagaaaataatcagcacaaacataacaatatagaatattcggcttaggtaacattt 95  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  23861027 acaatctgatcatttattcgtaaatttttatgttagaaaataatcagcacaaacgtaacgatatagaatattcgacttaggtaacattt 23861115  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 26605774 - 26605836
Alignment:
Q  130 tgaaattattaagtttgtttatgttatgatcatatttatttttgtattttttgatgtaagtga 192  Q
    |||||||||||||||||||||| |||||||| | |||||||   | ||||||| |||||||||    
T  26605774 tgaaattattaagtttgtttatattatgatcttctttatttccattttttttgttgtaagtga 26605836  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 19199174 - 19199214
Alignment:
Q  130 tgaaattattaagtttgtttatgttatgatcatatttattt 170  Q
    ||||||| |||||||||||||||||||||| || |||||||    
T  19199174 tgaaattgttaagtttgtttatgttatgattatctttattt 19199214  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 1540361 - 1540434
Alignment:
Q  115 ggagaataataagactgaaattattaagtttgtttatgttatgatcatatttatttttgtattttttgatgtaa 188  Q
    |||||| |||| |||| ||||||||||||||||| |||| |||||| | ||||||||  ||||||||| |||||    
T  1540361 ggagaaaaatatgactaaaattattaagtttgttcatgtgatgatcctctttattttgttattttttgttgtaa 1540434  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 26815208 - 26815246
Alignment:
Q  132 aaattattaagtttgtttatgttatgatcatatttattt 170  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  26815208 aaatttttaagtttgtttatgttatgattatatttattt 26815246  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 1543672 - 1543745
Alignment:
Q  115 ggagaataataagactgaaattattaagtttgtttatgttatgatcatatttatttttgtattttttgatgtaa 188  Q
    |||||| |||| |||| ||||||||||||||||| |||| ||| || | ||||||||  ||||||||| |||||    
T  1543672 ggagaaaaatatgactaaaattattaagtttgttcatgtgatggtcctctttattttgttattttttgttgtaa 1543745  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 24179374 - 24179331
Alignment:
Q  144 ttgtttatgttatgatcatatttatttttgtattttttgatgta 187  Q
    ||||||||||||||||||||||||||||  ||||||||| ||||    
T  24179374 ttgtttatgttatgatcatatttattttcctattttttgttgta 24179331  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 29451354 - 29451394
Alignment:
Q  130 tgaaattattaagtttgtttatgttatgatcatatttattt 170  Q
    ||||||| ||||||||||||||||||||||| | |||||||    
T  29451354 tgaaattcttaagtttgtttatgttatgatcttctttattt 29451394  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 30580936 - 30580984
Alignment:
Q  122 aataagactgaaattattaagtttgtttatgttatgatcatatttattt 170  Q
    |||| |||||||||| |||||||||||||||||||| |  |||||||||    
T  30580936 aatatgactgaaattcttaagtttgtttatgttatgtttctatttattt 30580984  T

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