View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_8 (Length: 508)
Name: NF0943_low_8
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 32 - 322
Target Start/End: Original strand, 14159148 - 14159436
Alignment:
| Q |
32 |
aaacttgttcaacattcatatagataatttcctaccacacattacaatacaaaactcctaaaagcttgcaaccacctttcaaacactcttcattctctct |
131 |
Q |
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| T |
14159148 |
aaacttgttcaacattcatatagataatttcctaccacacattacaatacaaaactcctaaaagcttgcaaccacctttcaaacactcttcattctctct |
14159247 |
T |
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| Q |
132 |
ttgtttcactaccaaacaaaagagagnnnnnnnnnncaaaataataactgttagtaactgcaataacttccatcttaaaactaacatcaaaatgatacat |
231 |
Q |
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| T |
14159248 |
ttgtttcactaccaaacaaaagagagagaaaaa---caaaattataactgttagtaactgcaataacttccatgttaaaactaacatcaaaatgatacat |
14159344 |
T |
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| Q |
232 |
gcatagtttcaatccaaagacattggtcactgcatgcatgat-ttgttaacttgatgatatctttgaagatatagttagaggtaatttcaaa |
322 |
Q |
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| T |
14159345 |
ggatagtttctatccaaacacattggtcactgcatgcatgatcttgttaacttgatgatatctttgaagatatagttagaggtaatttcaaa |
14159436 |
T |
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Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 385 - 481
Target Start/End: Original strand, 14159498 - 14159595
Alignment:
| Q |
385 |
actaatccctctaaataattaattaagttcttgcaattgtagagattaatcattttcgtctataatattaatt-aaattcacaatatcataaaagttg |
481 |
Q |
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| T |
14159498 |
actaatccctctaagtaatttattaagtttttgaaattgtagagattaagcattttcgtctataacattaattgaatttcacaatataataaaagttg |
14159595 |
T |
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