View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0943_low_9 (Length: 497)
Name: NF0943_low_9
Description: NF0943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0943_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 251 - 466
Target Start/End: Original strand, 29205582 - 29205797
Alignment:
| Q |
251 |
ctgttgacggtaaacaaattcgttcaaatgcgaaatcaatgtttattacaaactattaggggcaatcccaatccaagttgcagagtcgattctaacgatt |
350 |
Q |
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| T |
29205582 |
ctgttgacggtaaacaaattcgttcaaatgcgaaatcaatgtttattacaaactattaggggcaatcccaatccaagttgcagagtcgattctaacgatt |
29205681 |
T |
|
| Q |
351 |
aatgttagtattttcacgtgtgagtaagaatctcacattggatgataaagtggatgttcagccacaaaggctccacacacattgtgttttccaatcatcc |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29205682 |
aatgttagtattttcacgtgtgagtaagaatctcacattggatgataaagtggatgttcagccacaaaggctccacacacattgtgttttccaatcatcc |
29205781 |
T |
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| Q |
451 |
aaaacttttttgtggc |
466 |
Q |
| |
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|||||||||||||||| |
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| T |
29205782 |
aaaacttttttgtggc |
29205797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 29205425 - 29205530
Alignment:
| Q |
94 |
cacttctgtaggtacaactgcagattggtggtctgtgggtgtcatactttacgagcttcttgtgggtattccaccttttaatgcagatcatgcacaggta |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29205425 |
cacttctgtaggtacaactgcagattggtggtctgtgggtgtcatactttacgagcttcttgtgggtattccaccttttaatgcagatcatgcacaggta |
29205524 |
T |
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| Q |
194 |
ggtgaa |
199 |
Q |
| |
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||||| |
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| T |
29205525 |
tgtgaa |
29205530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 251 - 466
Target Start/End: Complemental strand, 12646293 - 12646078
Alignment:
| Q |
251 |
ctgttgacggtaaacaaattcgttcaaatgcgaaatcaatgtttattacaaactattaggggcaatcccaatccaagttgcagagtcgattctaacgatt |
350 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12646293 |
ctgttgacggtaaacaaattcgttcaaatacaaaatcaatgtttattacaaactattagggacaatcccaatccaagttgcagagtcgattctaacgatt |
12646194 |
T |
|
| Q |
351 |
aatgttagtattttcacgtgtgagtaagaatctcacattggatgataaagtggatgttcagccacaaaggctccacacacattgtgttttccaatcatcc |
450 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646193 |
aatgttagtattttcaagtgtgagtaagaatctcacattggatgataaagtggatgttcagccacaaaggctccacacacattgtgttttccaatcatcc |
12646094 |
T |
|
| Q |
451 |
aaaacttttttgtggc |
466 |
Q |
| |
|
|||||||||||||||| |
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| T |
12646093 |
aaaacttttttgtggc |
12646078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 94 - 199
Target Start/End: Complemental strand, 12646450 - 12646345
Alignment:
| Q |
94 |
cacttctgtaggtacaactgcagattggtggtctgtgggtgtcatactttacgagcttcttgtgggtattccaccttttaatgcagatcatgcacaggta |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646450 |
cacttctgtaggtacaactgcagattggtggtctgtgggtgtcatactttacgagcttcttgtgggtattccaccttttaatgcagatcatgcacaggta |
12646351 |
T |
|
| Q |
194 |
ggtgaa |
199 |
Q |
| |
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|||||| |
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|
| T |
12646350 |
ggtgaa |
12646345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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