View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0944_high_10 (Length: 371)

Name: NF0944_high_10
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0944_high_10
NF0944_high_10
[»] chr6 (3 HSPs)
chr6 (147-339)||(11298217-11298409)
chr6 (97-151)||(11298883-11298937)
chr6 (269-331)||(11292878-11292940)
[»] chr7 (1 HSPs)
chr7 (285-331)||(30903989-30904035)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 147 - 339
Target Start/End: Complemental strand, 11298409 - 11298217
Alignment:
Q  147 aaaaacacagttaattatttagaaagnnnnnnnnntacagtatagtaatgaataaaaagagtaaatatgtaaaataatcgttctctttcatttattcatc 246  Q
    ||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11298409 aaaaacacagttaattatttagatagaaaaaaaaatacagtatagtaatgaataaaaagagtaaatatgtaaaataatcgttctctttcatttattcatc 11298310  T
Q  247 aagtcaattgtgagacgagtgtataatttatattaatttgtatcagcatcaacaaaacttacagaaaagagaccatgatgtattaccacaggt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11298309 aagtcaattgtgagacgagtgtataatttatattaatttgtatcagcatcaacaaaacttacagaaaagagaccatgatgtattagcacaggt 11298217  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 11298937 - 11298883
Alignment:
Q  97 catcgttctcaaattattatatccaactttgtttttgtttttattataataaaaa 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11298937 catcgttctcaaattattatatccaactttgtttttgtttttattataataaaaa 11298883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 11292940 - 11292878
Alignment:
Q  269 ataatttatattaatttgtatcagcatcaacaaaacttacagaaaagagaccatgatgtatta 331  Q
    ||||||||||||||||||||||   | |||||||||||||| |||||||||||||||||||||    
T  11292940 ataatttatattaatttgtatcttaagcaacaaaacttacacaaaagagaccatgatgtatta 11292878  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 30904035 - 30903989
Alignment:
Q  285 tgtatcagcatcaacaaaacttacagaaaagagaccatgatgtatta 331  Q
    |||||| ||| |||||||||||||| ||||||||||||| |||||||    
T  30904035 tgtatctgcaacaacaaaacttacacaaaagagaccatgttgtatta 30903989  T

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