View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0944_high_13 (Length: 346)
Name: NF0944_high_13
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 27 - 337
Target Start/End: Complemental strand, 52340519 - 52340209
Alignment:
| Q |
27 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52340519 |
caccgggatccaccaacaacttcttccttggcggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
52340420 |
T |
|
| Q |
127 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52340419 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
52340320 |
T |
|
| Q |
227 |
agatacctctctcattgtcgtgggcatttttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattg |
326 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52340319 |
agatacctctctcattgtcatgggcaattttataaatttaatcatagatggtacatattagtatcatacccatgcatgtccattaaactataaaatattg |
52340220 |
T |
|
| Q |
327 |
atgagaataat |
337 |
Q |
| |
|
|| | |||||| |
|
|
| T |
52340219 |
ataataataat |
52340209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 52334516 - 52334316
Alignment:
| Q |
27 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttattt |
126 |
Q |
| |
|
|||| ||||||||||||||||||||||| || || ||||| | |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52334516 |
cacccggatccaccaacaacttcttcctcggcggtgcaggagagagaggcattcaaattcaagacaaattcgtcaaattcaccgccattggtgtttattt |
52334417 |
T |
|
| Q |
127 |
gcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggt |
226 |
Q |
| |
|
||| || |||||| ||||||||||||| | ||||||||||| | | || |||| | ||||| || ||||||||||||||| ||||| ||||||||| |
|
|
| T |
52334416 |
gcaggatatcgctgttccatatcttgcagagaaatggaaggccagatctgctcatgaattaacggataccgttcccttcttcagagacatcgttacaggt |
52334317 |
T |
|
| Q |
227 |
a |
227 |
Q |
| |
|
| |
|
|
| T |
52334316 |
a |
52334316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 75 - 337
Target Start/End: Complemental strand, 9184664 - 9184402
Alignment:
| Q |
75 |
gtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaagacatcgctattccatatcttgcggcgaaatggaagggtaaacc |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9184664 |
gtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaggacatcgctattccatatcttgccgcgaaatggaagggtaaacc |
9184565 |
T |
|
| Q |
175 |
tcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggtagatacctctctcattgtcgtgggcatttttataaatttaatcataga |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
9184564 |
tcctcacaagttaacagaatccgttcccttcttcttggacattgttacaggtggatacctctctaattgtcatgggcatttttataaatttaatcataga |
9184465 |
T |
|
| Q |
275 |
tggtacatattagtatcatacccatgcatgtccattaaactataaaatattgatgagaataat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
9184464 |
tggtacatattagtatcatacccatgcatgtccattaaactataaaatattgataataataat |
9184402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 9181106 - 9180917
Alignment:
| Q |
38 |
accaacaacttcttccttggtggcgcaggggtgagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaagacatcg |
137 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
9181106 |
accaacaacttcttccttggcggcacaggggctagaggtatccaaatccaagacaaattcgtcaaattcaccgccattggtgtttatttgcaggatatcg |
9181007 |
T |
|
| Q |
138 |
ctattccatatcttgcggcgaaatggaagggtaaacctcctcacaagttaacagaatccgttcccttcttcatggacattgttacaggta |
227 |
Q |
| |
|
|| ||||||||||||| | ||||||||||| ||| || |||| | ||||| || ||||||||||||||| ||||| |||||||||| |
|
|
| T |
9181006 |
ctgttccatatcttgcagagaaatggaaggccaaatctgctcatgaattaacggataccgttcccttcttcagagacatcgttacaggta |
9180917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 9190347 - 9190295
Alignment:
| Q |
27 |
caccgggatccaccaacaacttcttccttggtggcgcaggggtgagaggtatc |
79 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9190347 |
caccgagatccaccaacaacttcttccttggcagcgcaggggtgagaggtatc |
9190295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University