View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_high_14 (Length: 326)
Name: NF0944_high_14
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 137 - 294
Target Start/End: Complemental strand, 11298374 - 11298217
Alignment:
| Q |
137 |
tacagtatagtaatgaataaaaagagtaaatatgtaaaataatcgttctctttcatttattcatcaagtcaattgtgagacgagtgtataatttatatta |
236 |
Q |
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| T |
11298374 |
tacagtatagtaatgaataaaaagagtaaatatgtaaaataatcgttctctttcatttattcatcaagtcaattgtgagacgagtgtataatttatatta |
11298275 |
T |
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| Q |
237 |
atttgtatcagcatcaacaaaacttacagaaaagagaccatgatgtattaccacaggt |
294 |
Q |
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| T |
11298274 |
atttgtatcagcatcaacaaaacttacagaaaagagaccatgatgtattagcacaggt |
11298217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 11298937 - 11298883
Alignment:
| Q |
53 |
catcgttctcaaattattatatccaactttgtttttgtttttattataataaaaa |
107 |
Q |
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| T |
11298937 |
catcgttctcaaattattatatccaactttgtttttgtttttattataataaaaa |
11298883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 11292940 - 11292878
Alignment:
| Q |
224 |
ataatttatattaatttgtatcagcatcaacaaaacttacagaaaagagaccatgatgtatta |
286 |
Q |
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| T |
11292940 |
ataatttatattaatttgtatcttaagcaacaaaacttacacaaaagagaccatgatgtatta |
11292878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 30904035 - 30903989
Alignment:
| Q |
240 |
tgtatcagcatcaacaaaacttacagaaaagagaccatgatgtatta |
286 |
Q |
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| T |
30904035 |
tgtatctgcaacaacaaaacttacacaaaagagaccatgttgtatta |
30903989 |
T |
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