View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_high_22 (Length: 267)
Name: NF0944_high_22
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 33784103 - 33783878
Alignment:
| Q |
29 |
aaatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacatccctggaaaaaatatatataagtggattaagttcaaaatatgtcattgatt |
128 |
Q |
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| T |
33784103 |
aaatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacatccctggaaaaaatatatataagtggattaagttcaaaatatgtcattgatt |
33784004 |
T |
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| Q |
129 |
caattaaaatacccacactaattataaaattttctacattatacaaagcaaaccaaaaatgtacctgcagttactttcccaaacatttcannnnnnnnga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33784003 |
caattaaaatacccacactaattataaaattttctacattatacaaagcaaaccaaaaatgtacctgcagttactttcccaaacatttcattttttttga |
33783904 |
T |
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| Q |
229 |
agtcagtcatcatctgatcaagtttc |
254 |
Q |
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|||||||||||||||||||||||||| |
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| T |
33783903 |
agtcagtcatcatctgatcaagtttc |
33783878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 1562254 - 1562479
Alignment:
| Q |
29 |
aaatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacatccctggaaaaaatatatataagtggattaagttcaaaatatgtcattgatt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1562254 |
aaatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacatccctggaaaaaatatatataagtggattaagttcaaaatatgtcattgatt |
1562353 |
T |
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| Q |
129 |
caattaaaatacccacactaattataaaattttctacattatacaaagcaaaccaaaaatgtacctgcagttactttcccaaacatttcannnnnnnnga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1562354 |
caattaaaatacccacactaattataaaattttctacattatacaaagcaaaccaaaaatgtacctgcagttactttcccaaacatttcattttttttga |
1562453 |
T |
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| Q |
229 |
agtcagtcatcatctgatcaagtttc |
254 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1562454 |
agtcagtcatcatctgatcaagtttc |
1562479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 23370862 - 23370815
Alignment:
| Q |
30 |
aatgtgtgcatgtggaagccccctcttttgaaactcaacagtgtacat |
77 |
Q |
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||||||||||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
23370862 |
aatgtgtgcatgtggtagccccctcttttgaaattctacagtatacat |
23370815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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