View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_high_23 (Length: 266)
Name: NF0944_high_23
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 54853062 - 54853333
Alignment:
| Q |
1 |
gttctccaaccaaaaaattgaatagaattgacaataaactgcataacttactgtggaagctaaacagagatactcaaaagtcactcaaagacaaagctta |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54853062 |
gttctccaaccaaaaaattgaatggaattgacaataaactgcataacttactgtggaagctaaacagagatactcaaaagtcactcaaagacaaagctta |
54853161 |
T |
|
| Q |
101 |
gcaaaaaccataccgaaagtatgtatgtata-------aatcttaatcctccacgctaccgtgtcatgtgtaaagcacgcactat---------aaatgc |
184 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54853162 |
gcaaaaaccataccgaaagtatgtatgtatatataaataatcttaatcctccacgctaccgtgtcatgtgtaaagcacgcactatattacaacaaaatgc |
54853261 |
T |
|
| Q |
185 |
cacgtcgatcttctccatcaaacccctctacttctctttaattaccaaattgccataagcttcttttccttt |
256 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
54853262 |
cacgtcgatcttctccatcaaacccctctacttctatttaattaccaaattgccataagcttcttttacttt |
54853333 |
T |
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