View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0944_high_31 (Length: 250)

Name: NF0944_high_31
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0944_high_31
NF0944_high_31
[»] chr8 (16 HSPs)
chr8 (1-243)||(4925982-4926224)
chr8 (1-236)||(4876089-4876324)
chr8 (1-134)||(21440310-21440443)
chr8 (1-134)||(4914253-4914386)
chr8 (1-134)||(4714066-4714199)
chr8 (1-134)||(10445981-10446114)
chr8 (1-76)||(4745027-4745102)
chr8 (1-155)||(4995506-4995660)
chr8 (1-132)||(4725500-4725631)
chr8 (1-132)||(4777298-4777429)
chr8 (1-134)||(4702730-4702863)
chr8 (1-134)||(4680600-4680733)
chr8 (8-238)||(4891106-4891333)
chr8 (37-134)||(4735970-4736067)
chr8 (1-238)||(4688133-4688367)
chr8 (1-76)||(4905138-4905213)


Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4925982 - 4926224
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacccatgtgtacatttact 100  Q
    |||||| |||||||||| ||| |||| ||||| |||||||||||||||||||  |||||||||||||||||||||||||| |||||||| |||||||| |    
T  4925982 aaaatgaagatcaaattgtggtggttcatttatattatcatagtttccataaaggaaagtagctctgattaaatattgaacacccatgtttacatttatt 4926081  T
Q  101 ttgtaacagtttctcactccacttggaaagctccgtacaaaatgtagttgttgttgatgagtaatcttctctgtgggtgatatactcttgcttacaccta 200  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||||     
T  4926082 ctgtaacagtttctaactccacttggaaagctccgtacaaaatgtagttgttgttgatgagtaatcatctctgcaggtgatatactcttacttacacctg 4926181  T
Q  201 tattgatgaattcagcatctgatatgtaatttatgcctatgat 243  Q
    |||  |||||||| |||||||||||||| ||||||||| ||||    
T  4926182 tatctatgaattctgcatctgatatgtagtttatgcctgtgat 4926224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4876089 - 4876324
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacccatgtgtacatttact 100  Q
    |||||| |||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |    
T  4876089 aaaatgaagatcaaattgtggtggatcatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatatccatgtttacatttatt 4876188  T
Q  101 ttgtaacagtttctcactccacttggaaagctccgtacaaaatgtagttgttgttgatgagtaatcttctctgtgggtgatatactcttgcttacaccta 200  Q
     |||| || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||  |||| ||||||| | |||||||||     
T  4876189 ctgtagcaatttctcactccacttggaaagctccttacaaaatgtagttgctgttgatgagtaatcttctctgcaggtgctatactcattcttacacctg 4876288  T
Q  201 tattgatgaattcagcatctgatatgtaatttatgc 236  Q
    |  | ||||||||||||||||| |||||||||||||    
T  4876289 ttcttatgaattcagcatctgaaatgtaatttatgc 4876324  T

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Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21440310 - 21440443
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacc-catgtgtacatttac 99  Q
    |||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||| | |||| | ||| ||||||||     
T  21440310 aaaatgaagatcaaattgtggtggttcatttagattatcatagtttccataatagaaagaagctcttattaaatatttagtaccacttgt-tacatttat 21440408  T
Q  100 tttgtaacagtttctcactccacttggaaagctcc 134  Q
    |||||||||||||||||||||||||||||||||||    
T  21440409 tttgtaacagtttctcactccacttggaaagctcc 21440443  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 4914253 - 4914386
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacc-catgtgtacatttac 99  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| | ||| ||||||||     
T  4914253 aaaatgtagatcaaattctggtggttgatttagattatcatagtttccataataaaaagaagctctgattaaatatttagtaccacttgt-tacatttat 4914351  T
Q  100 tttgtaacagtttctcactccacttggaaagctcc 134  Q
    | ||||||||||||| |||||||| ||||| ||||    
T  4914352 tctgtaacagtttctaactccactaggaaaactcc 4914386  T

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Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4714199 - 4714066
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacc-catgtgtacatttac 99  Q
    |||||| |||||||||||||| || | ||||| || |||||||||||| |||||||||| || |||||||||||||| |||||| | ||| ||||||||     
T  4714199 aaaatgaagatcaaattctggtggctcatttaaatcatcatagtttccgtaatagaaagaagatctgattaaatatttaataccacttgt-tacatttat 4714101  T
Q  100 tttgtaacagtttctcactccacttggaaagctcc 134  Q
    | ||||||| |||||||||||||||||||||||||    
T  4714100 tctgtaacaatttctcactccacttggaaagctcc 4714066  T

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Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 10446114 - 10445981
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacc-catgtgtacatttac 99  Q
    |||||| |||||||| | ||| | || |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||  |||||||     
T  10446114 aaaatgaagatcaaactgtggtgtttcatttagattatcatagtttccataatagaaagaaactctgattaaatattgaataccacttgt-aacatttat 10446016  T
Q  100 tttgtaacagtttctcactccacttggaaagctcc 134  Q
    | ||||||| |||||||||||||| ||||||||||    
T  10446015 tctgtaacaatttctcactccactaggaaagctcc 10445981  T

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Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4745102 - 4745027
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatat 76  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4745102 aaaatgaagatcaaattgtggtggttgatttagattatcatagtttccataatagaaagaagctctgattaaatat 4745027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 4995660 - 4995506
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacccatgtgtacatttact 100  Q
    |||||| |||||||||||||| || |  ||||||||||||||||| |||||||||||||  |||||||||||||||| | ||||  |   |||||||| |    
T  4995660 aaaatgaagatcaaattctggtggcttgtttagattatcatagttaccataatagaaagatgctctgattaaatatttagtaccacttgctacatttatt 4995561  T
Q  101 ttgtaacagtttctcactccacttggaaagctccgtacaaaatgtagttgttgtt 155  Q
     ||||||||||||||| |||| ||||||||||||  ||| | |||||||| ||||    
T  4995560 ctgtaacagtttctcattccaattggaaagctcctcacatattgtagttgctgtt 4995506  T

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Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 4725631 - 4725500
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacc-catgtgtacatttac 99  Q
    |||||| |||||||||| ||| || |  ||||||| ||||||||| ||||||||||||| ||||||||||||||||| | |||| | ||| || |||||     
T  4725631 aaaatgaagatcaaattgtggtggcttgtttagatcatcatagttaccataatagaaagaagctctgattaaatatttagtaccacttgt-tatatttat 4725533  T
Q  100 tttgtaacagtttctcactccacttggaaagct 132  Q
    ||||||||| |||||||||||||||||||||||    
T  4725532 tttgtaacaatttctcactccacttggaaagct 4725500  T

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Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 4777298 - 4777429
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacc-catgtgtacatttac 99  Q
    |||||| |||||||||| ||| || | ||||| || ||||||||| ||||||||||||| ||||||||||||||||| | ||||  |||| ||||||||     
T  4777298 aaaatgaagatcaaattgtggagggtcatttaaatcatcatagttaccataatagaaagaagctctgattaaatatttagtaccagatgt-tacatttat 4777396  T
Q  100 tttgtaacagtttctcactccacttggaaagct 132  Q
    | ||||||| |||||||||||||||||||||||    
T  4777397 tctgtaacaatttctcactccacttggaaagct 4777429  T

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Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4702863 - 4702730
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaata-cccatgtgtacatttac 99  Q
    |||||| ||||||||||||||||| | ||||| || ||||||||| ||||||||||||||||||||||||||||||| | || | | ||| ||||||||     
T  4702863 aaaatgaagatcaaattctgggggatcatttaaatcatcatagttaccataatagaaagtagctctgattaaatatttagtatcacttgt-tacatttat 4702765  T
Q  100 tttgtaacagtttctcactccacttggaaagctcc 134  Q
    | ||||||| |||||||||||| | ||||| ||||    
T  4702764 tctgtaacaatttctcactccattaggaaaactcc 4702730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4680733 - 4680600
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacccatgtgtacatttact 100  Q
    |||||| |||||||||| ||| || | ||||| || ||| ||||||||||||||||||| |||||||||||||||||   ||||  ||  ||||| || |    
T  4680733 aaaatgaagatcaaattgtggtggctcatttaaatcatcgtagtttccataatagaaagaagctctgattaaatatttggtaccattggttacatctatt 4680634  T
Q  101 ttgtaacagtttctcactccacttggaaagctcc 134  Q
    |||||||| ||| |||||||||| ||||||||||    
T  4680633 ttgtaacaatttttcactccactgggaaagctcc 4680600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 4891106 - 4891333
Alignment:
Q  8 agatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaatacc-catgtgtacatttactttgtaa 106  Q
    |||||||||| ||| || |  ||||||||||||||||||||||||   |||| || |||||| ||||||| | |||| | ||| |||| |||  ||||||    
T  4891106 agatcaaattgtggtggcttgtttagattatcatagtttccataaagaaaagaagttctgataaaatatttagtaccacttgt-tacacttatgttgtaa 4891204  T
Q  107 cagtttctcactccacttggaaagctccgtacaaaatgtagttgttgttgatgagtaatcttctctgtgggtgatatactcttgcttacacctatattga 206  Q
    |||||||||||||||||||||||||| |  ||| | | |||||| |||    ||| || ||| |||||  ||| ||| ||||||||||||||  |||  |    
T  4891205 cagtttctcactccacttggaaagcttctcacatattctagttgctgt---agagaaaacttatctgtacgtgctatcctcttgcttacaccagtatcta 4891301  T
Q  207 tgaattcagcatctgatatgtaatttatgcct 238  Q
    ||||||  ||||||||||||||||||||||||    
T  4891302 tgaatttggcatctgatatgtaatttatgcct 4891333  T

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Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 4736067 - 4735970
Alignment:
Q  37 atcatagtttccataatagaaagtagctctgattaaatattgaatacc-catgtgtacatttactttgtaacagtttctcactccacttggaaagctcc 134  Q
    ||||||| ||||||||   |||||||||||||||||||||| | |||| | ||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  4736067 atcatagcttccataaagaaaagtagctctgattaaatatttagtaccacttgt-tacatttattttgtaacaatttctcactccacttggaaagctcc 4735970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4688367 - 4688133
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatattgaata-cccatgtgtacatttac 99  Q
    |||||| |||||||||| ||| || |  |||| || |||||||||||||||||||||||  |||||||||||||||| | || | | ||| ||||||||     
T  4688367 aaaatgaagatcaaattgtggtggctcgtttaaatcatcatagtttccataatagaaagacgctctgattaaatatttagtatcacttgt-tacatttat 4688269  T
Q  100 tttgtaacagtttctcactccacttggaaagctccgtacaaaatgtagttgttgttgatgagtaatcttctctgtgggtgatatactcttgcttacacct 199  Q
    | ||||||| |||||||||||||| ||||| ||||  |||   | ||||||||||| |  | |||   ||||||| || | ||| ||||| |||||||||    
T  4688268 tctgtaacaatttctcactccactaggaaaactcctcacatgttctagttgttgtttaacaataa---tctctgtaggaggtatcctcttacttacacct 4688172  T
Q  200 atattgatgaattcagcatctgatatgtaatttatgcct 238  Q
      ||  |||||||  |||||||| |||||||||||||||    
T  4688171 gaatctatgaatttggcatctgaaatgtaatttatgcct 4688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4905138 - 4905213
Alignment:
Q  1 aaaatggagatcaaattctgggggttgatttagattatcatagtttccataatagaaagtagctctgattaaatat 76  Q
    |||||| |||||||||| ||| || | ||||| || |||||| || |||||||||||||||||||| |||||||||    
T  4905138 aaaatgaagatcaaattgtggagggtcatttaaatcatcataattaccataatagaaagtagctctaattaaatat 4905213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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