View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0944_high_5 (Length: 416)
Name: NF0944_high_5
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 5605442 - 5605814
Alignment:
| Q |
16 |
atgggagggttgataaaggcaagttagttagtgctatgattggcactcttggtaggttaggggagattaatcttgctttgggattgtttgaaagagctag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5605442 |
atgggagggttgataaaggcaagttagttagtgctatgattggcactcttggtaggttaggggagattaatcttgctttgggattgtttgaaagagctag |
5605541 |
T |
|
| Q |
116 |
gcttgaagggtatggaagcactgtgtattccttttcggccatgattagtgcatttggccgaaatggccgcttccttgatgccgtggatttgttcaggtcc |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5605542 |
gcttgaagggtatggaagcactgtgcattccttttcggccatgattagtgcatttggccgaaatggccgcttccctgatgccgtggatttgttcaggtcc |
5605641 |
T |
|
| Q |
216 |
atgagtagctggggagttgtacctaatgtgataacgtacaactcaatcattgatgctggggcgaaaggggaagtgagttttgatgtagtcgttaagtttt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5605642 |
atgagtagctggggagttgtacctaatgtgataacgtacaattcaatcattgatgctggggcgaaaggggaagtgagttttgatgtagtcgttaagtttt |
5605741 |
T |
|
| Q |
316 |
acgatgaaatgatagccaacggcttaatgccagatcgtcttacttacaactcactcctttctgtttgcgcatc |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5605742 |
acgatgaaatgatagccaacggcttaatgccagatcggcttacttacaactcactcctttctgtttgcgcatc |
5605814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 5595470 - 5595101
Alignment:
| Q |
16 |
atgggagggttgataaaggcaagttagttagtgctatgattggcactcttggtaggttaggggagattaatcttgctttgggattgtttgaaagagctag |
115 |
Q |
| |
|
|||||||| ||| ||| || |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
5595470 |
atgggaggattgctaagggtaagttagttagtactatgattggtactcttggtaggttaggggagattaatcatgctttgagattgtttgaaagtgctag |
5595371 |
T |
|
| Q |
116 |
gcttgaagggtatggaagcactgtgtattccttttcggccatgattagtgcatttggccgaaatggccgcttccttgatgccgtggatttgttcaggtcc |
215 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| ||||||||||| | |||||| ||||| | |||| |||||| || |||||||| |||||| |
|
|
| T |
5595370 |
gcttgaagggcatggaaacactgtgtattccttttcggctatgattagtgcttatggccgtaatgggcacttcagtgatgctgtagatttgtttaggtcc |
5595271 |
T |
|
| Q |
216 |
atgagtagctggggagttgtacctaatgtgataacgtacaactcaatcattgatgctggggcgaaaggggaagtgagttttgatgtagtcgttaagtttt |
315 |
Q |
| |
|
||||| |||||||| ||| |||||| | || |||| || || | |||||||| ||||| |||||||| ||| |||||||||||| |||||||||| |
|
|
| T |
5595270 |
atgagaagctggggtgtttatcctaatttaatttcgtataattcgttaattgatgcgggggctaaaggggaggtggattttgatgtagttgttaagtttt |
5595171 |
T |
|
| Q |
316 |
acgatgaaatgatagccaacggcttaatgccagatcgtcttacttacaactcactcctttctgtttgcgc |
385 |
Q |
| |
|
||||||||| |||| | ||| | |||||||| | ||||||||||| ||||| |||||||| ||||| |
|
|
| T |
5595170 |
ttgatgaaatgctagctgaaggcattgtgccagataggcttacttacaattcactgctttctgtctgcgc |
5595101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University