View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_high_9 (Length: 373)
Name: NF0944_high_9
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_high_9 |
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| [»] scaffold1528 (1 HSPs) |
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Alignment Details
Target: scaffold1528 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: scaffold1528
Description:
Target: scaffold1528; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 511 - 314
Alignment:
| Q |
30 |
ctacttaggaaaaaggacaaaggagatttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaggacttttcactataattt |
129 |
Q |
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| T |
511 |
ctacttagggaaaaggacaaaggagatttatcctaattcacaccacaat-tggagctagttctagtctcttcacactcgaaggacttttcactataattt |
413 |
T |
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| Q |
130 |
acctgattacgaattgcactaagacacctagtcttagatgtcttttgcctcaaactatatgtattctacctcaaactagaggaaattttaataccagta |
228 |
Q |
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| T |
412 |
acctgattacgaatttcactaagacacctagtcttagatgtcttttgcctcaaactatatgtattctaccccaaactagaggaaattttaatacaagta |
314 |
T |
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Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 17753787 - 17753590
Alignment:
| Q |
30 |
ctacttaggaaaaaggacaaaggagatttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaggacttttcactataattt |
129 |
Q |
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| T |
17753787 |
ctacttagggaaaaggacaaaggagatttatcctaattcacaccacaat-tggagctagttctagtctcttcacactcgaaggacttttcactataattt |
17753689 |
T |
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| Q |
130 |
acctgattacgaattgcactaagacacctagtcttagatgtcttttgcctcaaactatatgtattctacctcaaactagaggaaattttaataccagta |
228 |
Q |
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| T |
17753688 |
acctgattacgaatttcactaagacacctagtcttagatgtcttttgcctcaaactatatgtattctaccccaaactagaggaaattttaatacaagta |
17753590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 24454397 - 24454235
Alignment:
| Q |
30 |
ctacttaggaaaaaggacaaaggagatttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaggacttttcactat----- |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
24454397 |
ctacttaggaaaaaggacaaaggagatttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaagatttttcactataatta |
24454298 |
T |
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| Q |
125 |
-aatttacctgattacgaattgcactaagacacctagtcttagatgtcttttgcctcaaacta |
186 |
Q |
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| T |
24454297 |
taatttacctgattacgaatttcaccaagacacctggtcctaaatttcctttgcctcaaacta |
24454235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 24454244 - 24454160
Alignment:
| Q |
198 |
cctcaaactagaggaaattttaataccagtatatttgtttacaaagactc--agagttttaaacacaattaggctcagtacaata |
280 |
Q |
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| T |
24454244 |
cctcaaactagtggaaattttaatacatgtaaatttgcttacaaagactcaaagagttgtaaacacaattaggctcaatacaata |
24454160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 2467987 - 2468067
Alignment:
| Q |
57 |
ttatcctaattcacaccacaatctggagctagttctagtctcttcacactcgaaggacttttcactataatttacctgatta |
138 |
Q |
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|||||||| ||||| ||||||||| ||||| ||| |||| |||||||| ||||| ||||||||||||| |||||||||| |
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| T |
2467987 |
ttatcctagttcactccacaatctatagctacttc-agtcctttcacacttaaaggatttttcactataatatacctgatta |
2468067 |
T |
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