View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0944_low_1 (Length: 517)
Name: NF0944_low_1
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 21)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 93 - 505
Target Start/End: Original strand, 47414134 - 47414539
Alignment:
| Q |
93 |
gaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcg |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
47414134 |
gaagtcacctactttgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgtg |
47414233 |
T |
|
| Q |
193 |
tttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgct |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47414234 |
tttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttattataaggaaggcaaagaactttaaaatcatcaaaagctccaataaactgct |
47414333 |
T |
|
| Q |
293 |
tctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47414334 |
tctctccattggtcatgaagggaaccttgactgagcttccattatg-------aaatcgtagtcttttgtttccgaagcatcaaattgttgattccacac |
47414426 |
T |
|
| Q |
393 |
ccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgtctccttattg |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47414427 |
ccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgtctccttattg |
47414526 |
T |
|
| Q |
493 |
gcccatgagttca |
505 |
Q |
| |
|
||||||||||||| |
|
|
| T |
47414527 |
gcccatgagttca |
47414539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 93 - 485
Target Start/End: Original strand, 45883674 - 45884068
Alignment:
| Q |
93 |
gaagtcacctacttcgactttagaaagatgaagctt--gtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttg |
190 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
45883674 |
gaagtcacctactttgactttagaatgacaaagcttttgtggtgtagtaatgtagattcagaagccaccttctcgaccaaagctgacagtccatcttttg |
45883773 |
T |
|
| Q |
191 |
cgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactg |
290 |
Q |
| |
|
| ||||||||||||| ||||||||||||| ||| ||||| | |||| | |||||| | |||||| ||||||||| |||||||||||| |||||| || |
|
|
| T |
45883774 |
catttggaagaaaaaagtacatagagaatcgacgcttatctccaccttgctcataagggatacaaagcactttaaaaccatcaaaagctctaataaattg |
45883873 |
T |
|
| Q |
291 |
ct-tctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattcca |
389 |
Q |
| |
|
| | ||| |||||||||||||||| |||||||| || ||||||||||| ||||||||||||| |||||||| ||||| |||||| |||||||||| |
|
|
| T |
45883874 |
atctttct-tgctggtcatgaagggaactttgactgaactaccattatgaatatgaaaatcgtagtattttgttttcgaaggatcaaacggttgattcca |
45883972 |
T |
|
| Q |
390 |
cacccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgtctc |
485 |
Q |
| |
|
| || || ||||||| |||||||||||| |||||| | || || ||||| ||||||||||||| |||||||| | |||||| ||||||||||| |
|
|
| T |
45883973 |
tgctcccttaaagtacaatgcattagcaaatatgagtctggttaagttgttaactgaccctggagaaagaatttctttaataagaccatttgtctc |
45884068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 97 - 426
Target Start/End: Complemental strand, 5160454 - 5160126
Alignment:
| Q |
97 |
tcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttg |
196 |
Q |
| |
|
||||||||||| ||| || |||||||| | |||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |||| |||| |
|
|
| T |
5160454 |
tcacctacttcttcttcaggaagatgaaacctgtggtgtagtaactcagattcagaagccaccttcttaaccaaagtcgacaagccatcttttgcatttg |
5160355 |
T |
|
| Q |
197 |
gaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctc |
296 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||| ||||| ||||| ||||||| |||||||||||| || ||| ||||| |||||||||| ||||| |
|
|
| T |
5160354 |
gaaggaaaatgtacatagagaatggacgcttatctttgcctttcttatacggaagacgaagaactttaaagtcgtcataagcttcaataaactgattctc |
5160255 |
T |
|
| Q |
297 |
tccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccct |
396 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||| || ||||||||| |||||||| |||| |||| ||||||| | | | |||| | ||| |
|
|
| T |
5160254 |
ctcgctggtcatgaagggaaccttgactgagc-tccattcaaaaggtgaaaatcatagtctttcgttttcgaaacatcaaacttatcactccatgctcct |
5160156 |
T |
|
| Q |
397 |
ttgaagtacagtgcattagcaaagatgagt |
426 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| |
|
|
| T |
5160155 |
ttaaagtagagtgcattagcaaagatgagt |
5160126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 130 - 498
Target Start/End: Complemental strand, 16025628 - 16025260
Alignment:
| Q |
130 |
tggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtat |
229 |
Q |
| |
|
|||||||||| ||| |||| |||||||||| |||||| |||||| ||||||||||||||| | ||||||||||||| ||||| | |||| ||| ||| |
|
|
| T |
16025628 |
tggtgtagtacctcggattgagaagccaccctctcaatcaaagcagacagtccatctctttcatttggaagaaaaaaatacattcaaaattgacgcttat |
16025529 |
T |
|
| Q |
230 |
cttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagct |
329 |
Q |
| |
|
|||| |||| | || ||||||| ||| ||||| |||||||| ||||| | |||||| || | ||| |||||||||||||||| |||| | | | |
|
|
| T |
16025528 |
cttcaccttgtctgtatggaagacgaagtactttgaaatcatcgaaagcacaaataaattgatcctcgttgctggtcatgaagggaactttgattacgtt |
16025429 |
T |
|
| Q |
330 |
tccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagtttt |
429 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
16025428 |
gccattcagaatgtgaaaatcatagtcttttgtttccgaagcatcaaactgttgatcccacacccctttaaagtaaagtgcattagcaaatatgagtttc |
16025329 |
T |
|
| Q |
430 |
gtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgtctccttattggcccat |
498 |
Q |
| |
|
|| || |||||||| || ||| ||| ||||||| ||||||||| |||||||||||||| || |||||| |
|
|
| T |
16025328 |
gttaagttgttgacagaatctgaaggtagaatttcctcaataagaccatttgtctcctttttagcccat |
16025260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 94 - 425
Target Start/End: Complemental strand, 46479973 - 46479642
Alignment:
| Q |
94 |
aagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgt |
193 |
Q |
| |
|
|||||||||||||| |||||| || |||||||||| || |||| ||||||||||||||||||||| || |||||||||| || |||||| |||| | |
|
|
| T |
46479973 |
aagtcacctacttccactttaccaaatggaagcttgtgttgcagtagctcagattcagaagccaccttttcgaccaaagctgccaacccatcttttgcat |
46479874 |
T |
|
| Q |
194 |
ttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgctt |
293 |
Q |
| |
|
|||||||||||| |||||| | ||||| ||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
46479873 |
ttggaagaaaaaagtacatggtgaattgacgcttatcttcgccttgcttataaggaagaccgagaactttaaaaccatcaaaagctctaataaactgctt |
46479774 |
T |
|
| Q |
294 |
ctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacc |
393 |
Q |
| |
|
|| |||||||||||||||||||||||| ||| ||||| || |||||| |||||||||| |||| ||||||||||| | | ||||||| | |
|
|
| T |
46479773 |
cttcttgctggtcatgaagggaaccttgactgggctaccattcaaaaggtgaaactcgtagtcttccgtttttgaagcatcaaacttatcattccacgct |
46479674 |
T |
|
| Q |
394 |
cctttgaagtacagtgcattagcaaagatgag |
425 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |
|
|
| T |
46479673 |
cctttgaagtatagtgcattggcaaagatgag |
46479642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 94 - 485
Target Start/End: Complemental strand, 46474112 - 46473721
Alignment:
| Q |
94 |
aagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgt |
193 |
Q |
| |
|
|||||||||||||| |||||| || | |||||||||| |||||||| |||||||||||||||||||| ||||||||| || || |||||| |||| | |
|
|
| T |
46474112 |
aagtcacctacttccactttatcaaaaggaagcttgtgttgtagtaaatcagattcagaagccaccttttcaaccaaacttggaagcccatcttttgcat |
46474013 |
T |
|
| Q |
194 |
ttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgctt |
293 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| ||||||| |||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
46474012 |
ttggaagaaaaaagtacatagtgaaacgacgcttatcttcgccttgcttataaggaagaccaagaactttaaaaccatcaaaagctctaataaactgctt |
46473913 |
T |
|
| Q |
294 |
ctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacc |
393 |
Q |
| |
|
|| | ||||| |||| |||||| |||||||| ||||| ||| || |||||| |||||||||||| |||||||||| | |||||||| |
|
|
| T |
46473912 |
cttcttgctagtcataaaggaaaccttaactgagctgccattgagaaggtaaaaatcatagtcttttgttgttgaagcatcaatcttctgattccatgat |
46473813 |
T |
|
| Q |
394 |
cctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgtctc |
485 |
Q |
| |
|
||||| || |||| |||||||||||||| |||| | | || ||||||| ||||||| |||||||||||| | |||||| ||||||||||| |
|
|
| T |
46473812 |
cctttaaaatacaatgcattagcaaagacgagtctggataagttgttgattgacccttgaggaagaatttctttaataagaccatttgtctc |
46473721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 94 - 364
Target Start/End: Complemental strand, 46484231 - 46483961
Alignment:
| Q |
94 |
aagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgt |
193 |
Q |
| |
|
|||||||||||||| |||||| || | |||||||||| |||||||| ||| |||||||||||||||| ||||||||| || || |||||| |||| | |
|
|
| T |
46484231 |
aagtcacctacttccactttatcaaaaggaagcttgtgttgtagtaaatcaaattcagaagccaccttttcaaccaaacttggaagcccatcttttgcat |
46484132 |
T |
|
| Q |
194 |
ttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgctt |
293 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| ||||||| |||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
46484131 |
ttggaagaaaaaagtacatagtgaaacgacgcttatcttcgccttgcttataaggaagaccaagaactttaaaaccatcaaaagctctaataaactgctt |
46484032 |
T |
|
| Q |
294 |
ctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgttt |
364 |
Q |
| |
|
|| | ||||| |||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
46484031 |
cttcttgctagtcataaagggaaccttgactgagctgccattgagaaggtgaaaatcatagtcttttgttt |
46483961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 94 - 419
Target Start/End: Complemental strand, 46498131 - 46497803
Alignment:
| Q |
94 |
aagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgt |
193 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||| || |||||||||||||| ||||| | |||||||| ||||| || ||| |||||| |||| | |
|
|
| T |
46498131 |
aagtcacctacttccactttgtcaagaggaagcttgtgttgcagtaactcagattcggaagcaagcttctcaagcaaagttggcagcccatcttttgcat |
46498032 |
T |
|
| Q |
194 |
ttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgctt |
293 |
Q |
| |
|
|||||||||||| |||||| | |||| ||| | ||||| |||| ||||||||||| | |||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
46498031 |
ttggaagaaaaaagtacatcgtaaattgacgcttgtcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaatctctaataaactgctt |
46497932 |
T |
|
| Q |
294 |
ct-ctc--cattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccac |
390 |
Q |
| |
|
|| ||| || | ||||||||| |||||| |||||| ||||||| || ||||||||| ||| | || ||||||||||||||||| | | ||||||| |
|
|
| T |
46497931 |
cttctcatcactagtcatgaagtcaaccttaactgagtttccattcaaaaggtgaaaatcatagacattcgtttccgaagcatcaaaattatcattccac |
46497832 |
T |
|
| Q |
391 |
acccctttgaagtacagtgcattagcaaa |
419 |
Q |
| |
|
| ||||| ||||| |||||||||||||| |
|
|
| T |
46497831 |
tctcctttaaagtatagtgcattagcaaa |
46497803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 121 - 485
Target Start/End: Complemental strand, 45903110 - 45902746
Alignment:
| Q |
121 |
tgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||| | || |||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
45903110 |
tgaagcttgtggtgtagtaactcagattcagaagctaccttctcaactaaactttgcaaaccatcttttgcttttggaagaaaaatatacatagagaatt |
45903011 |
T |
|
| Q |
221 |
tccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaacctt |
320 |
Q |
| |
|
||| |||||||||||| | ||||||||||| ||| ||||| ||| |||| ||| | | ||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
45903010 |
gacgcttatcttctccttgctcataaggaagacgaagtactttgaaaccatcgaaaacgcggataaactgcctcttctcgctggtcatgaagggaacctt |
45902911 |
T |
|
| Q |
321 |
gactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaag |
420 |
Q |
| |
|
||||||||| ||||| ||| || ||||| |||| || ||| |||||||| ||| | | ||||| | ||||| || |||| ||| ||||||||| |
|
|
| T |
45902910 |
gactgagctaccatttagaaggtaaaaattatagttttgtgtcctcgaagcatgaaacttatttttccatgctcctttaaaatacaatgcgttagcaaag |
45902811 |
T |
|
| Q |
421 |
atgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgtctc |
485 |
Q |
| |
|
|||||| | || ||||||||||| |||||| || ||||| || | |||||||||||||||||| |
|
|
| T |
45902810 |
atgagtctggttaatttgttgaccgaccctcgataaagaaattcattaataaggccatttgtctc |
45902746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 122 - 418
Target Start/End: Complemental strand, 46490864 - 46490568
Alignment:
| Q |
122 |
gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt |
221 |
Q |
| |
|
|||||||||| | |||| |||| ||||||||||||| |||||||| ||||| || ||| |||||| |||| ||||||||||||| |||||||| |||| |
|
|
| T |
46490864 |
gaagcttgtgttttagtgactccgattcagaagccaacttctcaagcaaagttggcagcccatcttttgcatttggaagaaaaaagtacatagtaaattc |
46490765 |
T |
|
| Q |
222 |
ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccat--tggtcatgaagggaacct |
319 |
Q |
| |
|
||| ||||||| |||| ||||||||||| | |||||||||||||||||| ||||||| |||| | || |||| ||| | | |||||||||||||||| |
|
|
| T |
46490764 |
acgcttatcttcgccttgcttataaggaaggccaagaactttaaaatcatcgaaagctctaatatattg-ttct-tccttgctagtcatgaagggaacct |
46490667 |
T |
|
| Q |
320 |
tgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaa |
418 |
Q |
| |
|
| | |||||| ||||| || ||||||||| |||||||| |||| ||||||||||| | | ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
46490666 |
taattgagctgccattcaaaaggtgaaaatcatagtctttcgtttttgaagcatcaaacttatcattccacactcctttgaagtatagtgcattagcaa |
46490568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 132 - 425
Target Start/End: Complemental strand, 5156390 - 5156097
Alignment:
| Q |
132 |
gtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatct |
231 |
Q |
| |
|
||||||||| | || || || ||||| |||||||||||| |||| |||||||||| | || ||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
5156390 |
gtgtagtaagtgaggtttagcagccaacttctcaaccaatgctggcagtccatctttagcatttggaagaaaaatgtacatagagaatcgacgcttatct |
5156291 |
T |
|
| Q |
232 |
tctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagcttc |
331 |
Q |
| |
|
| ||||| ||||| ||||||| |||||||||||| || || ||||| |||||||||| ||||| | |||||||||||||||||||||| ||||| | |
|
|
| T |
5156290 |
ttgccttttttatacggaagacgaagaactttaaagccaccataagcttcaataaactgattctcctcgctggtcatgaagggaaccttgaccgagctgc |
5156191 |
T |
|
| Q |
332 |
cattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgag |
425 |
Q |
| |
|
|||| || ||||||||| |||||||| |||| | || ||||||| | | | |||| | ||||| ||||| |||||||||||||||||||| |
|
|
| T |
5156190 |
cattcaaaaggtgaaaatcatagtctttcgttttcaaaacatcaaacttctcactccatgctcctttaaagtagagtgcattagcaaagatgag |
5156097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 131 - 369
Target Start/End: Complemental strand, 51944036 - 51943798
Alignment:
| Q |
131 |
ggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatc |
230 |
Q |
| |
|
||||||| ||||||||| ||| | ||| || ||||| |||||||||| |||||| |||| ||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
51944036 |
ggtgtaggaactcagatgtagaggacactttttcaactaaagctgacaacccatcttttgcatttggaagaaaaaaatacatagagaattggcgcttatc |
51943937 |
T |
|
| Q |
231 |
ttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagctt |
330 |
Q |
| |
|
||| ||||| |||||||||||| ||||||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51943936 |
ttcacctttcttataaggaagatgaagaactttaaaatcatcataaacttcaataaactgcttcttattgctggtcatgaagggaaccttgactgagcta |
51943837 |
T |
|
| Q |
331 |
ccattatgaatgtgaaaatcgtagtcttttgtttccgaa |
369 |
Q |
| |
|
||||| ||| ||||||||| || ||||| |||| |||| |
|
|
| T |
51943836 |
ccatttagaaggtgaaaatcataatctttagttttcgaa |
51943798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 97 - 372
Target Start/End: Original strand, 46526370 - 46526644
Alignment:
| Q |
97 |
tcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttg |
196 |
Q |
| |
|
||||||||||| ||||| | | | |||| ||||||||||||||||||| ||||||||| |||||||| | |||| || || ||||||||||| ||| |
|
|
| T |
46526370 |
tcacctacttcaacttttgtgaaaggaaggttgtggtgtagtaactcaggttcagaagctaccttctcgattaaagttggcaaaccatctcttgctcttg |
46526469 |
T |
|
| Q |
197 |
gaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactg-cttct |
295 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| || ||||| ||| |||| ||| | | ||||| || || | |
|
|
| T |
46526470 |
gaagaaaaatgtacatagagaattgacgcttatcttctccttgcttataaggaagacggagtactttgaaaccatcgaaaacactgataaattgtctatt |
46526569 |
T |
|
| Q |
296 |
ctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagca |
372 |
Q |
| |
|
|| | |||||||||||||||||||||||||||| ||||| | || ||||||||| |||| ||||||| ||||||| |
|
|
| T |
46526570 |
ct-cgctggtcatgaagggaaccttgactgagctgccatt-taaaggtgaaaatcatagttttttgttctcgaagca |
46526644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 285
Target Start/End: Original strand, 46236782 - 46236930
Alignment:
| Q |
137 |
gtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcc |
236 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| | ||||| |||||| |||| | |||||||||||| ||||||||||||| | | ||||| || |
|
|
| T |
46236782 |
gtaactcaaattcagaagccagcttctcaaccaaggttgacaacccatcttttgcatctggaagaaaaatatacatagagaattgacactcatctttgcc |
46236881 |
T |
|
| Q |
237 |
tttgttataaggaagacaaagaactttaaaatcatcaaaagctccaata |
285 |
Q |
| |
|
|| |||||||||||| ||||||||||| || |||||||| |||||||| |
|
|
| T |
46236882 |
ttgattataaggaagataaagaactttataaccatcaaaatctccaata |
46236930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 151 - 426
Target Start/End: Complemental strand, 46532045 - 46531770
Alignment:
| Q |
151 |
gaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaa |
250 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| ||||||| ||| | |||||||||| |||||||||||||| || |||| | |||| |||||||||| |
|
|
| T |
46532045 |
gaagccactttctcaatcaaagctaacaatccatcttgtgcatcgggaagaaaaaagtacatagagaattgacgaatatcgttgccttgcttataaggaa |
46531946 |
T |
|
| Q |
251 |
gacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatc |
350 |
Q |
| |
|
||| ||| | |||||| |||||||||| ||||||||||||| | ||||||||||||||||| | |||||| ||| ||| ||||||||| |
|
|
| T |
46531945 |
gacgaaggatcttaaaaccatcaaaagcatttataaactgcttcttcttgctagtcatgaagggaaccttaattgagctgccaccgagaaggtgaaaatc |
46531846 |
T |
|
| Q |
351 |
gtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagt |
426 |
Q |
| |
|
| ||||||||||| |||||||||||| |||||| ||| | || || ||||| |||||||||||||| |||||| |
|
|
| T |
46531845 |
atggtcttttgtttttgaagcatcaaatggttgatgccatgctccattaaagtagagtgcattagcaaaaatgagt |
46531770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 426
Target Start/End: Original strand, 46554278 - 46554461
Alignment:
| Q |
243 |
ataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagcttccattatgaatg |
342 |
Q |
| |
|
||||||||||| ||| || |||||| |||||||| | | |||||||| |||| | ||||| ||||||||||||||| |||||| |||| | ||| | |
|
|
| T |
46554278 |
ataaggaagacgaaggaccttaaaaccatcaaaaacactgataaactgactctccctgctggtcttgaagggaaccttgaatgagctaccatcaagaagg |
46554377 |
T |
|
| Q |
343 |
tgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgagt |
426 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| |||||| ||| | ||||| || || |||||||||||||| |||||| |
|
|
| T |
46554378 |
tgaaaatcatagtcttttgtttctgaagcgtcaaacggttgatgccatgcacctttaaaatatagtgcattagcaaaaatgagt |
46554461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 271
Target Start/End: Original strand, 47397278 - 47397427
Alignment:
| Q |
122 |
gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt |
221 |
Q |
| |
|
|||| ||||| | |||||||||| ||| |||||||| |||||||||||| ||| || ||||||| |||| |||||||||||||||||||| ||||| | |
|
|
| T |
47397278 |
gaagattgtgttctagtaactcaaatttagaagccatgttctcaaccaaatctgtcaatccatcttttgcatttggaagaaaaatgtacatggagaaatg |
47397377 |
T |
|
| Q |
222 |
ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcat |
271 |
Q |
| |
|
||| ||||||| |||| |||||| ||||| ||| ||||| ||||||| |
|
|
| T |
47397378 |
gcgcttatcttcaccttgcctataagaaagacgaagtactttgaaatcat |
47397427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 350
Target Start/End: Original strand, 46549004 - 46549185
Alignment:
| Q |
169 |
aaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaat |
268 |
Q |
| |
|
|||| ||| ||||||||| ||| ||||||||||||| |||||||||||||| || |||||| ||||| |||||||||||| |||||||||| ||| |
|
|
| T |
46549004 |
aaagatgagagtccatcttttgtatttggaagaaaaaagtacatagagaattgtcgtttatcttttccttatttataaggaagataaagaactttgaaac |
46549103 |
T |
|
| Q |
269 |
catcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatc |
350 |
Q |
| |
|
|||||||| | | |||||||| | | | |||| ||||||||||||||||| ||||| ||||| ||| ||||||||| |
|
|
| T |
46549104 |
catcaaaaacactgataaactgatcattcctgctggttatgaagggaaccttgaccgagctgccattgagaaggtgaaaatc |
46549185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 424
Target Start/End: Complemental strand, 46538958 - 46538838
Alignment:
| Q |
304 |
gtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagt |
403 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| || |||||| ||||||||||||| |||| ||||| | || ||| || |||||||||| |
|
|
| T |
46538958 |
gtcatgaagggaaccttgactgagctgccattaagaaggttaaaatcatagtcttttgtttttgaagtatcaacctcctgtaaccatactcctttgaagt |
46538859 |
T |
|
| Q |
404 |
acagtgcattagcaaagatga |
424 |
Q |
| |
|
| |||||||| |||||||||| |
|
|
| T |
46538858 |
atagtgcatttgcaaagatga |
46538838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 350
Target Start/End: Original strand, 4613932 - 4614037
Alignment:
| Q |
245 |
aaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtg |
344 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| | || |||||||||| ||| | | | ||||||||||||||||| || ||| | | ||| ||||| || |
|
|
| T |
4613932 |
aaggaagacgaagaatcttaaaatcatcaaaaacaccgataaactgctcctcacaactagtcatgaagggaaccttaacagagttgcaattctgaatatg |
4614031 |
T |
|
| Q |
345 |
aaaatc |
350 |
Q |
| |
|
|||||| |
|
|
| T |
4614032 |
aaaatc |
4614037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 46554173 - 46554250
Alignment:
| Q |
141 |
ctcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaa |
218 |
Q |
| |
|
|||| |||| |||||||| ||||||| ||||||||||| |||||| |||| | ||||| |||| |||||||||||| |
|
|
| T |
46554173 |
ctcatattccgaagccactttctcaatcaaagctgacaacccatcttttgcatcgggaagtaaaaagtacatagagaa |
46554250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 122 - 498
Target Start/End: Complemental strand, 35155573 - 35155197
Alignment:
| Q |
122 |
gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt |
221 |
Q |
| |
|
|||||||||| | ||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
35155573 |
gaagcttgtgctctagcaactcaaattcagaagccaccttctcaaccaaagctgatagtccatcttttgcatttggaagaaaaatgtacatagagaattt |
35155474 |
T |
|
| Q |
222 |
ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttg |
321 |
Q |
| |
|
|||| ||||| ||||| ||||| ||||||| ||||||||||||| |||||||||||| |||||| || | | |||||||||||||||||||| |
|
|
| T |
35155473 |
ccgctcatcttttccttgcttatacggaagacgaagaactttaaaaccatcaaaagctctaataaattgatcaaggctgctggtcatgaagggaaccttg |
35155374 |
T |
|
| Q |
322 |
actgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaaga |
421 |
Q |
| |
|
|||||||| ||||| ||| ||||||||| || | |||||| | | ||| ||||| |||| | ||||| || ||||||||||||||||||| |
|
|
| T |
35155373 |
actgagctgccattcagaaggtgaaaatcatatttttttgtcatacatctagaaaacggttgaatccaagctcctttaaaatacagtgcattagcaaaga |
35155274 |
T |
|
| Q |
422 |
tgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgtctccttattggcccat |
498 |
Q |
| |
|
||||| | || || |||||||| ||| || ||| || || ||| | |||||||||||||||||| || || |||||| |
|
|
| T |
35155273 |
tgagtctggttaagttgttgaccgactcttgagcaacaacttttttaataaggccatttgtctcttttttagcccat |
35155197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 93 - 488
Target Start/End: Complemental strand, 15556196 - 15555801
Alignment:
| Q |
93 |
gaagtcacctacttcgactttagaaagatgaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcg |
192 |
Q |
| |
|
||||||||| |||| |||||||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||| |||| |
|
|
| T |
15556196 |
gaagtcaccaactttgactttagaaagattaaacttacggtgtagtaactcagattctgaagccaccttttcaaccaaagccgagagtccatcttttgca |
15556097 |
T |
|
| Q |
193 |
tttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgct |
292 |
Q |
| |
|
| |||||||| || ||| ||||||||| || || || |||| |||||| |||||||||| ||||| ||| |||||||||| |||||| | || | |
|
|
| T |
15556096 |
tctggaagaataaagtagatagagaatcggcgatcatattggccttgtttataatgaagacaaagtactttgaaaccatcaaaagcaccaatatattgat |
15555997 |
T |
|
| Q |
293 |
tctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacac |
392 |
Q |
| |
|
|||| || |||| || |||||||||| |||||| ||||| ||| ||||||||| |||||||| |||| ||||||||||| | |||| ||| | |
|
|
| T |
15555996 |
cctctttgctgctcataaacggaaccttgagtgagctaccattgagaaggtgaaaatcatagtctttcgttttggaagcatcaaacttctgataccatag |
15555897 |
T |
|
| Q |
393 |
ccctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgtctcctt |
488 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| | || || ||||||| |||||||| ||| || | | ||||||||||||||||||||| |
|
|
| T |
15555896 |
tcctttaaagtacagtgcatttgcaaagatgagtctggttaagctgttgaccgaccctggttgaataactcctttaataaggccatttgtctcctt |
15555801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 148 - 355
Target Start/End: Complemental strand, 35162567 - 35162361
Alignment:
| Q |
148 |
tcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctttgttataag |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
35162567 |
tcagaagccaccttctcaaccaaagctgacaggccatcttttgcatttggaagaaaa-tgtacatagagaatttccgctcatcttttccttgcttataag |
35162469 |
T |
|
| Q |
248 |
gaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagcttccattatgaatgtgaaa |
347 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| ||||||||| | | |||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
35162468 |
gaagacgaagaactttaaaaccatcaaaagctctaataaactgatcaaggttggtagtcatgaagggaaccttgactgagcttccattcagaaggtgaaa |
35162369 |
T |
|
| Q |
348 |
atcgtagt |
355 |
Q |
| |
|
||| |||| |
|
|
| T |
35162368 |
atcatagt |
35162361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 482
Target Start/End: Complemental strand, 35162322 - 35162234
Alignment:
| Q |
394 |
cctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggccatttgt |
482 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||| | || | |||| |||||||||| ||||||||| || | ||||||||||||||| |
|
|
| T |
35162322 |
cctttaaaatacagtgcgttagcaaagataagtctggttaggttgtcgactgacccttgaggaagaagttctttaataaggccatttgt |
35162234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 122 - 290
Target Start/End: Original strand, 9692688 - 9692856
Alignment:
| Q |
122 |
gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt |
221 |
Q |
| |
|
|||||||||| | ||| |||||| ||||||||||||| |||||||||| |||| | ||| ||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
9692688 |
gaagcttgtgctctaggaactcaaattcagaagccactttctcaaccatagctaatagtacatcttttgcatttggaagaaaaatgtacatagagaattg |
9692787 |
T |
|
| Q |
222 |
ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactg |
290 |
Q |
| |
|
||| ||| || ||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
9692788 |
tcgcttattttttccttaattataaggaagacgaagaactttaaaaccatcaaaagctctaataaactg |
9692856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 122 - 290
Target Start/End: Original strand, 9675666 - 9675834
Alignment:
| Q |
122 |
gaagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaattt |
221 |
Q |
| |
|
|||||||| | | ||| |||||| |||||||||||||||| ||||||| ||| || |||||| || |||| |||||||||||||||||||||||||||| |
|
|
| T |
9675666 |
gaagcttgggctctaggaactcaaattcagaagccaccttttcaaccatagccgatagtccaccttttgcatttggaagaaaaatgtacatagagaattg |
9675765 |
T |
|
| Q |
222 |
ccgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactg |
290 |
Q |
| |
|
||| ||||| | |||| | |||||| |||||||| ||||||||| |||||||||||| ||||||||| |
|
|
| T |
9675766 |
tcgcttatctccaccttgctcataagggagacaaagcactttaaaaccatcaaaagctctaataaactg |
9675834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 21464340 - 21464457
Alignment:
| Q |
302 |
tggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaa |
401 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||| |||||||||||||||||||| |||| || || | |||||||| | | |||||| ||||| || |
|
|
| T |
21464340 |
tggtcatgaaaggaaccttgaccgggctaccattaagaatgtgaaaatcgtagtctcttgtatcagatgtatcaaattcctcttcccacactcctttaaa |
21464439 |
T |
|
| Q |
402 |
gtacagtgcattagcaaa |
419 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
21464440 |
gtatagtgcatttgcaaa |
21464457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 476
Target Start/End: Original strand, 9675938 - 9676020
Alignment:
| Q |
394 |
cctttgaagtacagtgcattagcaaagatgagttttgtgaatttgttgactgaccctggaggaagaattttctcaataaggcc |
476 |
Q |
| |
|
||||| || || ||||||||||||||||||||| | || || |||||||| |||||| ||||||||||| | ||||||||| |
|
|
| T |
9675938 |
cctttaaaatatagtgcattagcaaagatgagtctggttaagttgttgaccgacccttcaggaagaatttctttaataaggcc |
9676020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 123 - 291
Target Start/End: Complemental strand, 20359281 - 20359113
Alignment:
| Q |
123 |
aagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttc |
222 |
Q |
| |
|
|||||| | ||||||||| ||| ||| ||||| || ||||||||| ||||||| |||||||||| |||||||||| | |||||| ||||||||||||| |
|
|
| T |
20359281 |
aagcttttcgtgtagtaattcatatttagaagtcatcttctcaactaaagctggcagtccatcttttgcgtttggcaaaaaaatatacatagagaattga |
20359182 |
T |
|
| Q |
223 |
cgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgc |
291 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||||||| || | ||| ||||| ||||||||||| |
|
|
| T |
20359181 |
cgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgc |
20359113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 133 - 291
Target Start/End: Complemental strand, 20144761 - 20144603
Alignment:
| Q |
133 |
tgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatctt |
232 |
Q |
| |
|
|||||||| ||| ||| ||||| || ||||||||| ||||||| |||||||||| ||||||| || | |||||| ||||||||||||| |||||||||| |
|
|
| T |
20144761 |
tgtagtaattcatatttagaagtcatcttctcaactaaagctggcagtccatcttttgcgttaggcaaaaaaatatacatagagaattgacgcgtatctt |
20144662 |
T |
|
| Q |
233 |
ctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgc |
291 |
Q |
| |
|
||||| ||||||||||||| |||||||||| || | ||| ||||| ||||||||||| |
|
|
| T |
20144661 |
gaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaactgc |
20144603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 287
Target Start/End: Original strand, 20169003 - 20169167
Alignment:
| Q |
123 |
aagcttgtggtgtagtaactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttc |
222 |
Q |
| |
|
|||||| | ||||||||| ||| ||| |||| || ||||||||| ||||||| |||||||||| |||||||||| | |||||| ||||||||||||| |
|
|
| T |
20169003 |
aagcttttcgtgtagtaattcatattttgaagtcatcttctcaactaaagctggcagtccatcttttgcgtttggcaaaaaaatatacatagagaattga |
20169102 |
T |
|
| Q |
223 |
cgcgtatcttctcctttgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaa |
287 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||||||| || | ||| ||||| ||||||| |
|
|
| T |
20169103 |
cgcgtatcttgaccttttttataaggaagacgaagaactttagaaccgtcataagcttcaataaa |
20169167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 425
Target Start/End: Complemental strand, 17736065 - 17735779
Alignment:
| Q |
139 |
aactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaatttccgcgtatcttctcctt |
238 |
Q |
| |
|
|||||||| |||||||| || || |||| ||||||||||| |||||| || ||| |||||||||| ||| ||||||||| ||| |||| | |||| |
|
|
| T |
17736065 |
aactcagaatcagaagctactttatcaatcaaagctgacaacccatctttttcgtcaggaagaaaaaagtaaatagagaatgcacgcttatcattgcctt |
17735966 |
T |
|
| Q |
239 |
tgttataaggaagacaaagaactttaaaatcatcaaaagctccaataaactgcttctctccattggtcatgaagggaaccttgactgagcttccattatg |
338 |
Q |
| |
|
|| |||||||||| ||| ||||||||| ||||||||| | |||||||| || | ||||||| ||||||||||| ||||| | ||||| | |
|
|
| T |
17735965 |
gtttgtaaggaagaccaaggactttaaaaccatcaaaagaactgataaactgattattcttgctggtcataaagggaacctttactgacttgccattgag |
17735866 |
T |
|
| Q |
339 |
aatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaagtacagtgcattagcaaagatgag |
425 |
Q |
| |
|
|| || |||||| ||||| || |||| |||| |||||| || | ||||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
17735865 |
aaggtcaaaatcatagtccttcgtttttgaagtatcaaacggtcgtttccaaactcctttgaagtatagtgcattcgcaaagatgag |
17735779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 422
Target Start/End: Complemental strand, 17745083 - 17744963
Alignment:
| Q |
302 |
tggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaa |
401 |
Q |
| |
|
||||||| ||||||||||| ||||| | || ||| ||| || |||||| ||||| || |||| |||| |||||| | ||| ||||| || |||||||| |
|
|
| T |
17745083 |
tggtcataaagggaacctttactgacttgccgttaagaaggtcaaaatcatagtccttcgtttttgaagtatcaaacttttgtttccatactcctttgaa |
17744984 |
T |
|
| Q |
402 |
gtacagtgcattagcaaagat |
422 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
17744983 |
gtatagtgcattagcaaagat |
17744963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 425
Target Start/End: Complemental strand, 16722125 - 16722002
Alignment:
| Q |
302 |
tggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaa |
401 |
Q |
| |
|
||||||| || |||||||| ||||| | ||||| ||| || |||||| ||||| || |||| | || ||| || ||||| |||||||| |||||||| |
|
|
| T |
16722125 |
tggtcataaatggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgtagtatcgaactgttgtttccacactcctttgaa |
16722026 |
T |
|
| Q |
402 |
gtacagtgcattagcaaagatgag |
425 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
16722025 |
atatagtgcattagcaaagatgag |
16722002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 425
Target Start/End: Complemental strand, 17699139 - 17699016
Alignment:
| Q |
302 |
tggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaa |
401 |
Q |
| |
|
||||||| || |||||||| ||||| | ||||| ||| || |||||| ||||| || |||| | || ||| || ||||| |||||||| |||||||| |
|
|
| T |
17699139 |
tggtcataaatggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgtagtatcgaactgttgtttccacactcctttgaa |
17699040 |
T |
|
| Q |
402 |
gtacagtgcattagcaaagatgag |
425 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
17699039 |
atatagtgcattagcaaagatgag |
17699016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 419
Target Start/End: Complemental strand, 17718072 - 17717955
Alignment:
| Q |
302 |
tggtcatgaagggaaccttgactgagcttccattatgaatgtgaaaatcgtagtcttttgtttccgaagcatcaaattgttgattccacacccctttgaa |
401 |
Q |
| |
|
||||||| ||||||||||| ||||| | ||||| ||| || |||||| ||||| || |||| |||| |||||| |||| |||||||| |||||||| |
|
|
| T |
17718072 |
tggtcataaagggaacctttactgacttgccattgagaaggtcaaaatcatagtccttcgtttttgaagtatcaaagggttgtttccacactcctttgaa |
17717973 |
T |
|
| Q |
402 |
gtacagtgcattagcaaa |
419 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
17717972 |
atatagtgcatttgcaaa |
17717955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 17745245 - 17745165
Alignment:
| Q |
139 |
aactcagattcagaagccaccttctcaaccaaagctgacagtccatctcttgcgtttggaagaaaaatgtacatagagaat |
219 |
Q |
| |
|
|||||||| |||||||| || || |||| ||||||||||| |||||| || ||| |||||||||| ||| ||||||||| |
|
|
| T |
17745245 |
aactcagaatcagaagctactttatcaatcaaagctgacaaaccatctttttcgtcaggaagaaaaaagtaaatagagaat |
17745165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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