View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_11 (Length: 391)
Name: NF0944_low_11
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_11 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 54095451 - 54095825
Alignment:
| Q |
1 |
ctccctccttccgacatacatttgctactccaagaatttatcttcttctatactatatctttgatgaattcgaaactttttgcgtttatgccaatcataa |
100 |
Q |
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| T |
54095451 |
ctccctccttccgacatacatttgctactccaaaaatttatcttcttctatactatatctttgatgaattcgaaactttttgcgtttatgccaatcatat |
54095550 |
T |
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| Q |
101 |
aaggtaaggcaagatacatcccagtacttagaaattgtttgatttctagtgtattaggaaattgttttatttctagtgtattaggaatagatttcccaaa |
200 |
Q |
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| T |
54095551 |
aaggtaaggcaagatacatcccagtacttagaaattgtttgatttctagtgtattaggaaattgttttatttctagtgtattatgaatagatttcccaaa |
54095650 |
T |
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| Q |
201 |
agctacaatgacattctgacgcataaaactttttagtataagtagttccacttcttgttgcttattctttggctaattggatgggattttcatatggttc |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54095651 |
agctacgatgacattctgacgcataaaactttttagtataagtagttccacttcttgttgcttattctttggctaatcggatgggattttcatatggttc |
54095750 |
T |
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| Q |
301 |
gaacaattctttcgatttatgagtcaaataataa-gtacctatattgcatctcgcataaaacacactcaaaatat |
374 |
Q |
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| T |
54095751 |
gaacaattcttttgatttatgagtcaaataataaggtacctatattgcatctcgcataaaacacactcaaaatat |
54095825 |
T |
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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 80338 - 80310
Alignment:
| Q |
20 |
atttgctactccaagaatttatcttcttc |
48 |
Q |
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| T |
80338 |
atttgctactccaagaatttatcttcttc |
80310 |
T |
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