View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_12 (Length: 379)
Name: NF0944_low_12
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 41813664 - 41813377
Alignment:
| Q |
30 |
aattcaccatattctatttcgattaatctgattataactagtatatttggacatcctgtgtnnnnnnnntgactattggtgcatacaaattaaactaaaa |
129 |
Q |
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| T |
41813664 |
aattcaccatattctatttcgattaatatgattataactagtatatttggacatcctgtgtaaaaaaaatgactattggtgcatacaaattaaactaaaa |
41813565 |
T |
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| Q |
130 |
aagtcaaaatgaaattaacattgatcaacttttataatagaattttcttttacaatagttattcaaacaaagcattttattaaaaaacaatgcacaaagc |
229 |
Q |
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| T |
41813564 |
--gtcaaaatgaaattaacattgatcaacttttataatagaattttcttatacaatagttattcaaacaaagcattttattaaaaaacaatgcacaaagc |
41813467 |
T |
|
| Q |
230 |
atttaattaattttgttaactttacaagagatatacaatgtatacatgttactaaagagaatttgtggccactaatacataattttctct |
319 |
Q |
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| T |
41813466 |
atttaattaattttgttaactttacaagagatatacaatgtatacatgttacttaagagtatttgtggccactaatacataattttctct |
41813377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 5329493 - 5329533
Alignment:
| Q |
326 |
cctcaataataattagcaaaaacagaaaaccgcacctagta |
366 |
Q |
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| T |
5329493 |
cctcaataataattagcaaaaacagaaaaccgcacctagta |
5329533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 326 - 366
Target Start/End: Original strand, 20433601 - 20433641
Alignment:
| Q |
326 |
cctcaataataattagcaaaaacagaaaaccgcacctagta |
366 |
Q |
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| T |
20433601 |
cctcaataataattagcaaaaacagaaaacagcacctagta |
20433641 |
T |
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