View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_15 (Length: 354)
Name: NF0944_low_15
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 46942819 - 46942466
Alignment:
| Q |
1 |
atgaatgagtaacatagctttcatttcactgccgatttcatatttcggctgcatggtattggtacccttgaatttaaaataggatcgtgtgttctgttgt |
100 |
Q |
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| T |
46942819 |
atgaatgagtaacatagctttcatttcactgccgatttcatatttcggctgcatggtattggtacccttgaatttgaaataggatcgtgtgttctgttgt |
46942720 |
T |
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| Q |
101 |
ttagtgaatgtgtgtatgatagagtccagaaattttatatctttggtttacttgtatagagtatgcagcttaggaaggttacacttgagacttgttagag |
200 |
Q |
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| T |
46942719 |
ctagtgaatgtgtgtatgatagagtccagaaattttatatctttggtttacttgtatagagtatgcagcttaggaaggttacacttgagacttgttagag |
46942620 |
T |
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| Q |
201 |
atgagggaatagagtgttaaaattatcctttaggctacatttacaatgtgttgttagtttgtaaatactgatttggtttctggtttatctcatctattta |
300 |
Q |
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| T |
46942619 |
ataagggaatagagtgttaaaattatcctttaggctacatttacaatgtgttgttagtttgtaaatactgatttggtttctggtttatctcatctattta |
46942520 |
T |
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| Q |
301 |
tgttgcttgttttgattagttggaagaaaaaagtcgggaatggtaacaatgctc |
354 |
Q |
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| T |
46942519 |
tgttgcttgttttgattagttggaagaaaaaagtcggcaatggtaacaatgctc |
46942466 |
T |
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