View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0944_low_25 (Length: 293)
Name: NF0944_low_25
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 29517347 - 29517463
Alignment:
| Q |
77 |
aacattgtagaataaggaggaattaaaataaatacctgtgggacattcttccatatgtaaaatgtgaacatcttcaagaagtctgtttgaaattgcatta |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29517347 |
aacattgtagaataaggaggaattaaaataaatacctgtgggacattcttccatatgtaaaatgtgaacatcttcaagaagtctgtttgaaattgcatta |
29517446 |
T |
|
| Q |
177 |
ttgtgttagactcagac |
193 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29517447 |
ttgtgttagactcagac |
29517463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 29517497 - 29517555
Alignment:
| Q |
226 |
tctaactgtatttctttgtttgaactgttgttaataatttgtacggttttgagaataat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29517497 |
tctaactgtatttctttgtttgaactgttgttaataatttgtacggttttgagaataat |
29517555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 29517253 - 29517285
Alignment:
| Q |
35 |
agtaactttattagaatcaagattttaaataac |
67 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
29517253 |
agtaacttgattagaatcaagattttaaataac |
29517285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 40103584 - 40103529
Alignment:
| Q |
106 |
aaatacctgtgggacattcttccatatgtaaaatgtgaacatcttcaagaagtctg |
161 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| |||| |||||||| ||||||| |
|
|
| T |
40103584 |
aaatgcctgtgggacgttcttccatatgtaaaagctgaagatcttcaacaagtctg |
40103529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University