View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_27 (Length: 285)
Name: NF0944_low_27
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 32099973 - 32100079
Alignment:
| Q |
150 |
ttgttatattgatccgagtgaaactagattcgactccttaatggttgaaagcttgtggatagaaaaaatgttagaaaggtaactagagggtctgtcgggt |
249 |
Q |
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| T |
32099973 |
ttgttatattgatccgagtgaaactagattcgactccttaatggttgaaagcctgtggat-gaaaaaatgttagaaaggtaactagagggtcagtcgggt |
32100071 |
T |
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| Q |
250 |
ttcctaat |
257 |
Q |
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|||||||| |
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| T |
32100072 |
ttcctaat |
32100079 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 32099834 - 32099910
Alignment:
| Q |
1 |
aacatataatcttcgagccaaattaataaatacgnnnnnnncaagtctatatatttcaatccctataacttatctgcg |
78 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
32099834 |
aacatataatcttcgagccaaattaataaatacg-ttttttcaagtctatatatttcaatccctataacatatctgcg |
32099910 |
T |
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