View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_29 (Length: 272)
Name: NF0944_low_29
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 54918747 - 54918944
Alignment:
| Q |
34 |
atgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccattttccaaggtatcatcattcaattctcgtt |
133 |
Q |
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| T |
54918747 |
atgaaccaaaactatatatagaacaaaaaatataaaaccatttttctgtgcatagaatccttaatgccattttccaaggtatcatctttcaattctcatt |
54918846 |
T |
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| Q |
134 |
ggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgtactcattagactacttccatttttcaagggttaatcgtttcata |
232 |
Q |
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| T |
54918847 |
ggaaatttgtactcattgaactactatcattttccaatgctaactcaataattgtactcattagactactttcatttttcaa-ggttaatcgtttcata |
54918944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 54921930 - 54922001
Alignment:
| Q |
161 |
cattttccaatgttaactcaataattgtactcattagactacttccatttttcaagggttaatcgtttcata |
232 |
Q |
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| T |
54921930 |
cattttccaatgctaactccataattgtagtcattagactactaccattttccaaggcttaatcgtctcata |
54922001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 54922126 - 54922227
Alignment:
| Q |
89 |
aatccttaatgccattttccaaggtatcatcattcaattctcgttggaaatttgtactcattgaactactatcattttccaatgttaactcaataattgt |
188 |
Q |
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||||||||||| |||||||||| || | |||||||| ||| || ||||||| |||||| ||||||||||||||||||| ||||||| |||||| |
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| T |
54922126 |
aatccttaatgtcattttccaaagtttaatcattcatcactcatttgaaatttactctcattatactactatcattttccaattctaactcacaaattgt |
54922225 |
T |
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| Q |
189 |
ac |
190 |
Q |
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|| |
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| T |
54922226 |
ac |
54922227 |
T |
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