View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_3 (Length: 500)
Name: NF0944_low_3
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 92 - 482
Target Start/End: Complemental strand, 40749858 - 40749467
Alignment:
| Q |
92 |
gcagaaagctctgtgtgtaataaagctatccttcctgtgaaataaaatgtaccattagaaacctaatcatttacactatgcagtagtactagatcattgt |
191 |
Q |
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| T |
40749858 |
gcagaaagctctgtgtgtaataaagctatccttcctgtgaaataaaatgtaccattagaaacctaatcatttacactatgcagtagtactagatcattgt |
40749759 |
T |
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| Q |
192 |
cttaatttgtgaataattaaattatgaggaagtatgcattaaattcatacataatgcaaatgagaagtaattgaaaagaaaaacagttttttcatccaca |
291 |
Q |
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| T |
40749758 |
cttaatttgtgaataattaaattatgaggaagtatgcattaaattcatacataatgcaaatgagaagtaattgaaaagaaaaacagttttttcatccaca |
40749659 |
T |
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| Q |
292 |
tcaaaaacaataaattttcagaaacttctttatttataaaaaatcagtatgaaggaattgaatgtttaaatttgcatgactttggtctttgaaaccaaag |
391 |
Q |
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| T |
40749658 |
tcaaaaacaagaaattttcagaaacttctttatttataaaaaatcagtatgaaggaattgaatgtttaaatttgcatgactttggtctttgaaaccaaag |
40749559 |
T |
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| Q |
392 |
tcacctaaattttttgatact-nnnnnnnnngtgaattgaattaccttgagaagagtgtaccacaatcacacttatattctctagtaccaca |
482 |
Q |
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| T |
40749558 |
tcacctaaatttttttatactaaaaaaaaaagtgaattgaattaccttgagaagagtgtaccacaatcacacttatattctctagtaccaca |
40749467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 448 - 486
Target Start/End: Original strand, 31644073 - 31644111
Alignment:
| Q |
448 |
gtaccacaatcacacttatattctctagtaccacaggtt |
486 |
Q |
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| T |
31644073 |
gtaccacaatcacatttatattctcgagtaccacaggtt |
31644111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 42287244 - 42287194
Alignment:
| Q |
432 |
ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccaca |
482 |
Q |
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| T |
42287244 |
ttacctagagaagagggtgccacaatcacatctatattctctagtaccaca |
42287194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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