View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0944_low_31 (Length: 270)

Name: NF0944_low_31
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0944_low_31
NF0944_low_31
[»] chr7 (25 HSPs)
chr7 (28-270)||(1302229-1302472)
chr7 (51-270)||(8660185-8660405)
chr7 (107-270)||(8647699-8647862)
chr7 (101-270)||(6790402-6790571)
chr7 (68-262)||(3148331-3148524)
chr7 (107-270)||(7876775-7876938)
chr7 (70-270)||(8668427-8668626)
chr7 (92-174)||(10493038-10493120)
chr7 (134-270)||(8655374-8655510)
chr7 (111-189)||(8104067-8104145)
chr7 (86-262)||(13332099-13332275)
chr7 (107-270)||(8584477-8584640)
chr7 (107-189)||(8602732-8602814)
chr7 (86-219)||(27829337-27829470)
chr7 (111-171)||(8016333-8016393)
chr7 (107-189)||(8610662-8610744)
chr7 (107-188)||(8630226-8630307)
chr7 (107-270)||(17269098-17269261)
chr7 (107-174)||(8591396-8591463)
chr7 (107-214)||(17261390-17261497)
chr7 (109-189)||(8546675-8546755)
chr7 (98-197)||(8572579-8572678)
chr7 (107-189)||(8582661-8582743)
chr7 (109-207)||(8635503-8635601)
chr7 (107-207)||(29576993-29577093)
[»] chr1 (3 HSPs)
chr1 (70-270)||(4677481-4677680)
chr1 (107-270)||(15596057-15596220)
chr1 (113-219)||(34465240-34465346)
[»] chr2 (9 HSPs)
chr2 (113-270)||(16656541-16656698)
chr2 (107-197)||(7543275-7543365)
chr2 (107-212)||(12235796-12235901)
chr2 (118-270)||(43626329-43626481)
chr2 (107-197)||(12244417-12244507)
chr2 (107-197)||(14705461-14705551)
chr2 (107-213)||(16661064-16661170)
chr2 (107-207)||(12257918-12258018)
chr2 (119-197)||(12000343-12000421)
[»] chr5 (2 HSPs)
chr5 (113-270)||(28220951-28221108)
chr5 (113-270)||(42554128-42554285)
[»] chr4 (5 HSPs)
chr4 (70-261)||(9323014-9323204)
chr4 (70-261)||(9377493-9377683)
chr4 (70-261)||(9334986-9335175)
chr4 (107-197)||(35133452-35133542)
chr4 (70-267)||(30776079-30776275)
[»] chr8 (1 HSPs)
chr8 (113-270)||(43745828-43745982)
[»] chr6 (1 HSPs)
chr6 (83-158)||(28911288-28911363)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 270
Target Start/End: Original strand, 1302229 - 1302472
Alignment:
Q  28 caacaaactgtgcctaaatacgttaattggtagagaatacaaaga--aatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcag 125  Q
    |||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  1302229 caacaaacggtgcctaaatacgttaattggtagagaatacaaagagaaatttaccaaaaac-agtattttcaggattggttgcagcctgattcttagcag 1302327  T
Q  126 catcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1302328 catcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctc 1302427  T
Q  226 cagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||    
T  1302428 cagccacacagcaacacacgaataagtagttccaaggtctattcc 1302472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 51 - 270
Target Start/End: Original strand, 8660185 - 8660405
Alignment:
Q  51 taattggtagagaatacaaa--gaaatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatca 148  Q
    ||||||||||||||||||||  |||||| ||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  8660185 taattggtagagaatacaaatagaaattaaccaaaaac-agtgtttacaggattggttgcagcctgattcttagcagcatcaccaatcaacctttgatcg 8660283  T
Q  149 tcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaat 248  Q
    || |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||    
T  8660284 tcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactcgattgtgattctccagccacacagcaacacacgaat 8660383  T
Q  249 aagtagttccaaggcctattcc 270  Q
    | || ||||||||| |||||||    
T  8660384 aggttgttccaaggtctattcc 8660405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 107 - 270
Target Start/End: Original strand, 8647699 - 8647862
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||| || ||||  || ||||    
T  8647699 gcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatct 8647798  T
Q  207 ctactctattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    | ||||||||||| |  || |||||||||| |||||||||||| || ||||||||| |||||||    
T  8647799 caactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctattcc 8647862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 6790402 - 6790571
Alignment:
Q  101 ttggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtaga 200  Q
    ||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||  |    
T  6790402 ttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaa 6790501  T
Q  201 tgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    | ||||| ||||||||||| |  || |||||||||  |||||| ||||| || ||||| ||| |||||||    
T  6790502 taatctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcc 6790571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 262
Target Start/End: Original strand, 3148331 - 3148524
Alignment:
Q  68 aaagaaatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaag 167  Q
    ||||| ||||||||||||  ||| |||||||| || || | ||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||    
T  3148331 aaagatatttaccaaaaac-agtgttttcagggtttgtgggagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaag 3148429  T
Q  168 acggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaagg 262  Q
    | ||||| ||||||||||||||||| ||||  || ||||| ||||| ||||| |  || ||||| |||| ||| |||||||| || |||||||||    
T  3148430 aaggtgtggttttgttgccttggtcattgtgaataatctcaactctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaagg 3148524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 107 - 270
Target Start/End: Complemental strand, 7876938 - 7876775
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||||||||| || ||||||||||| ||||||||||||||||  ||||||||||||||||| ||||||||| |||||||||| || ||||  || || |    
T  7876938 gcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataattt 7876839  T
Q  207 ctactctattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    | ||||||||||| |  || |||||||||| |||||| ||||| || ||||||||| |||||||    
T  7876838 cgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcc 7876775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 270
Target Start/End: Original strand, 8668427 - 8668626
Alignment:
Q  70 agaaatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagac 169  Q
    |||||||||||||| | |||| |||||||| || || ||||  ||||||||||||||||| || ||||||||||| |||| | ||||||||||||||||     
T  8668427 agaaatttaccaaaga-tagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaa 8668525  T
Q  170 ggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattc 269  Q
    |||||| ||  ||| ||||| || ||||  || ||||| ||||| | ||| |  || |||||||||| |||||| ||||| || ||||||||  ||||||    
T  8668526 ggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttccaagatctattc 8668625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 10493120 - 10493038
Alignment:
Q  92 ttttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgt 174  Q
    |||||||| || || ||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    
T  10493120 ttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgt 10493038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 8655374 - 8655510
Alignment:
Q  134 atcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccaca 233  Q
    ||||||||||||| ||| ||||||||||||| ||| ||||| ||| | |||||||| || ||||  || ||||| |||||||||||||  || |||||||    
T  8655374 atcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccaca 8655473  T
Q  234 cagaaacacacgaataagtagttccaaggcctattcc 270  Q
    ||| |||||| ||||| || ||||| ||| |||||||    
T  8655474 cagcaacacatgaataggttgttccgaggtctattcc 8655510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 8104067 - 8104145
Alignment:
Q  111 cctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttg 189  Q
    ||||||||||||||||||||||||||||||||| |  ||| |||||||||||| |||||||||| ||| |||| |||||    
T  8104067 cctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttg 8104145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 262
Target Start/End: Complemental strand, 13332275 - 13332099
Alignment:
Q  86 atagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgc 185  Q
    ||||| |||||||| || || ||||  |||||||| ||||||||||| ||||| |||||||||| | |||||||||||||||| ||||| ||| | || |    
T  13332275 atagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttc 13332176  T
Q  186 cttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaagg 262  Q
    |||| || ||||  || ||||| ||||| | ||| |  || |||||||||| |||||| || || || |||||||||    
T  13332175 cttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttgttccaagg 13332099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 270
Target Start/End: Complemental strand, 8584640 - 8584477
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    |||||||||| |||||||||| |||| | |||||||||||||||||| ||||||||||| || |||||  |||| |||||||  |||||||  || ||||    
T  8584640 gcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatct 8584541  T
Q  207 ctactctattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    | ||||| || |  |  |||| ||| |||  |||||| ||||| || ||||||||| |||||||    
T  8584540 caactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcc 8584477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 8602732 - 8602814
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttg 189  Q
    ||||||||||| || |||||||||||||||||||||| |||||| || |||||||||||||| || || ||| |||| |||||    
T  8602732 gcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttg 8602814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 27829470 - 27829337
Alignment:
Q  86 atagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgc 185  Q
    ||||| |||| ||| ||||  ||||| || ||||||||||||||||| |||||||| || |  || |||||||||||| |||| |||||||| |||||||    
T  27829470 atagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgtcttgttgc 27829371  T
Q  186 cttggtcgttgtagatgatctctactctattgtg 219  Q
    |||| || ||||  || ||||| ||||| |||||    
T  27829370 cttgttcattgtgaataatctccactctgttgtg 27829337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 8016393 - 8016333
Alignment:
Q  111 cctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacgg 171  Q
    ||||||||||||||||||||||||||||||||| |  ||| |||||||||||| |||||||    
T  8016393 cctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacgg 8016333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 8610662 - 8610744
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttg 189  Q
    ||||| ||||| |||||||||||||| ||||||||||||||| | | ||||||||||||||| || || ||| |||| |||||    
T  8610662 gcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttg 8610744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 8630226 - 8630307
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgcctt 188  Q
    |||||||||| |||||||||| |||| | |||||||||||||||||| |||||||| || || |||||  |||| |||||||    
T  8630226 gcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgcctt 8630307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 270
Target Start/End: Original strand, 17269098 - 17269261
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||| ||||||||||| | ||||||||| ||||||| ||| |  |  ||||||||||||||||| || |||||||||||||| || ||||  || ||||    
T  17269098 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtataatct 17269197  T
Q  207 ctactctattgtgattctcca-gccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    | ||||||  ||| |||| || ||||||||| |||||| || || || || |||||| |||||||    
T  17269198 caactctaccgtg-ttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctattcc 17269261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 8591396 - 8591463
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgt 174  Q
    |||||||| || || ||||||||||| ||||||||||||||||  || |||||||||||||| |||||    
T  8591396 gcagcctggttttttgcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgt 8591463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 17261390 - 17261497
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||| ||||||||||| ||||||||||||||||||| ||| |  |  |||||||||||||| || ||  ||||||| ||||| || ||||  |||||||    
T  17261390 gcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatct 17261489  T
Q  207 ctactcta 214  Q
    | ||||||    
T  17261490 caactcta 17261497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 8546675 - 8546755
Alignment:
Q  109 agcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttg 189  Q
    ||||||||| || ||||||||||| |||| ||||||   ||  |||||||||||| |||| |||||||||||||| |||||    
T  8546675 agcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggtgttgttttgtttccttg 8546755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 8572579 - 8572678
Alignment:
Q  98 ggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgt 197  Q
    ||||| || ||||| ||||| || ||||||||||||||||| ||||||  ||  || ||||||||| |||| || |||||| |||| |||||||| ||||    
T  8572579 ggattagtagcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgttctgtttccttggtcattgt 8572678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 8582661 - 8582743
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttg 189  Q
    ||||| ||||| || ||||||||||| ||||| ||||||  ||  || ||||||||| |||| |||||||||||||| |||||    
T  8582661 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttg 8582743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 8635601 - 8635503
Alignment:
Q  109 agcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctc 207  Q
    |||||| || || ||||||||||| |||||||||||  | || |||||||||||| |||| |||||  || |||| ||||| || |||| |||||||||    
T  8635601 agcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgtggatgatctc 8635503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 29577093 - 29576993
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||||||||| |||||||||| ||| || |||||| |   ||| |||||||| |||| ||| ||||| ||| | |||||||| || |||| ||||||||    
T  29577093 gcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctattgccttgatcattgtggatgatct 29576994  T
Q  207 c 207  Q
    |    
T  29576993 c 29576993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 70 - 270
Target Start/End: Complemental strand, 4677680 - 4677481
Alignment:
Q  70 agaaatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagac 169  Q
    |||||||||||||| |  ||| |||||||  ||||| ||||  |||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||     
T  4677680 agaaatttaccaaagac-agtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaa 4677582  T
Q  170 ggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattc 269  Q
    |||||||||||||||||||| || ||||| || ||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||  ||||||    
T  4677581 ggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattc 4677482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 107 - 270
Target Start/End: Original strand, 15596057 - 15596220
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||  ||||||| ||||||||| |||||  || |||| |||||||| |||| ||| ||||    
T  15596057 gcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatct 15596156  T
Q  207 ctactctattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    | |||||||| || |  || |||||||||| |||||| ||||| || ||||||||| |||||||    
T  15596157 cgactctattctgttcatcaagccacacagcaacacaagaatacgttgttccaaggtctattcc 15596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 34465346 - 34465240
Alignment:
Q  113 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 212  Q
    |||||||||||||||| ||||||||| ||||||||||  || |||||||||||||| ||||| ||| |||| |||||||| ||||  || ||||||||||    
T  34465346 tgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctactc 34465247  T
Q  213 tattgtg 219  Q
    || ||||    
T  34465246 tactgtg 34465240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 113 - 270
Target Start/End: Complemental strand, 16656698 - 16656541
Alignment:
Q  113 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 212  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||| || ||||| ||||  ||||||||| |||    
T  16656698 tgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgctc 16656599  T
Q  213 tattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    | ||||||   |||| |||||||| |||||| |||||||| ||||||||| |||||||    
T  16656598 tgttgtgacggtccatccacacagcaacacatgaataagttgttccaaggtctattcc 16656541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 7543275 - 7543365
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgt 197  Q
    ||||| ||||||||||||  ||||||||||||||| ||||  |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  7543275 gcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgttctgttgccttggtcgttgt 7543365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 12235796 - 12235901
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||| |||||||||||||||||||| |||||||| ||||  |||||||||||||||||||| || |||||| | |||||||| |||||||  |||||||    
T  12235796 gcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgtgaatgatct 12235895  T
Q  207 ctactc 212  Q
    | ||||    
T  12235896 caactc 12235901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 270
Target Start/End: Original strand, 43626329 - 43626481
Alignment:
Q  118 cttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattg 217  Q
    ||||||||||||||| ||||||||||| || |  ||||||| ||||||||| ||||| ||| |||| |||||||| |||| ||| |||||||||||  ||    
T  43626329 cttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctg 43626428  T
Q  218 tgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    |  |  || |||||||||| || ||| ||||| || ||||||||| |||||||    
T  43626429 ttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcc 43626481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 197
Target Start/End: Complemental strand, 12244507 - 12244417
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgt 197  Q
    ||||| ||||| |||||||||||||| || ||||||||||| || |||||||||||| |||| ||||||||| ||||||| || |||||||    
T  12244507 gcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgt 12244417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 14705461 - 14705551
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgt 197  Q
    ||||| |||||||||||||||||||| |||||||  ||||  |||||||||||||||||||| || |||||| | |||||||| |||||||    
T  14705461 gcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgttctattgccttgatcgttgt 14705551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 213
Target Start/End: Complemental strand, 16661170 - 16661064
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||| |||| |||||||||| |||||| |||||||||| |||| || |||||||||||||| |||||  ||||||||||||  ||||||| ||| ||||    
T  16661170 gcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatct 16661071  T
Q  207 ctactct 213  Q
    | |||||    
T  16661070 caactct 16661064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 12258018 - 12257918
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 206  Q
    ||||| |||||||||||||||||||| |||||||||||||| |  || ||||||||| |||| || |||||| |||| ||||| |||||||  |||||||    
T  12258018 gcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatct 12257919  T
Q  207 c 207  Q
    |    
T  12257918 c 12257918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 12000343 - 12000421
Alignment:
Q  119 ttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgt 197  Q
    |||||||||||||| |  ||||||||||  || |||||||||||| |||| |||||| ||||||||||||| |||||||    
T  12000343 ttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgt 12000421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 28220951 - 28221108
Alignment:
Q  113 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 212  Q
    ||||| ||||||||||| || |||||||||| |||||||||||||||||||||||| || ||||||||||||||||| || ||||  || ||||| || |    
T  28220951 tgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccc 28221050  T
Q  213 tattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    ||||||| |  ||  ||||||||| |||||| ||||| || ||||||||  |||||||    
T  28221051 tattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctattcc 28221108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 270
Target Start/End: Complemental strand, 42554285 - 42554128
Alignment:
Q  113 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 212  Q
    |||| ||||||||||||||| |||||||||| || ||  || |||||||||||||| |||||||||||||||||||| || ||||  || ||||| ||||    
T  42554285 tgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaactc 42554186  T
Q  213 tattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    |||| || |  ||   |||||||| |||||||||||| || ||||||||| |||||||    
T  42554185 tattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctattcc 42554128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 261
Target Start/End: Complemental strand, 9323204 - 9323014
Alignment:
Q  70 agaaatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagac 169  Q
    |||||||||||||| | |||| |||||||| || || ||||  |||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||     
T  9323204 agaaatttaccaaaga-tagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaa 9323106  T
Q  170 ggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaag 261  Q
    |||||||||  ||| ||||| || ||||  || ||||| ||||| | ||| |  || |||||||||| |||||| ||||| || ||||||||    
T  9323105 ggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9323014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 261
Target Start/End: Complemental strand, 9377683 - 9377493
Alignment:
Q  70 agaaatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagac 169  Q
    |||||||||||||| | |||| |||||||| || || ||||  |||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||     
T  9377683 agaaatttaccaaaga-tagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaa 9377585  T
Q  170 ggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaag 261  Q
    |||||||||  ||| ||||| || ||||  || ||||| ||||| | ||| |  || |||||||||| |||||| ||||| || ||||||||    
T  9377584 ggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9377493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 261
Target Start/End: Complemental strand, 9335175 - 9334986
Alignment:
Q  70 agaaatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagac 169  Q
    |||||||||||||| | |||| |||||||| || || ||||  |||||||||||||||||||| ||||||||||| |||| | ||||||||||||||||     
T  9335175 agaaatttaccaaaga-tagtgttttcagggttagtagcagattgattcttagcagcatcacc-atcaacctttgctcattgttgaaagcaacaaaagaa 9335078  T
Q  170 ggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaag 261  Q
    |||||||||  ||| ||||| || ||||  || ||||| ||||| | ||| |  || |||||||||| |||||| ||||| || ||||||||    
T  9335077 ggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9334986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 35133452 - 35133542
Alignment:
Q  107 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgt 197  Q
    ||||| ||||||||||||||||||||||||||||||||||| |  |||||||||| | |||| |||||||||||||||| ||| |||||||    
T  35133452 gcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgt 35133542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 70 - 267
Target Start/End: Original strand, 30776079 - 30776275
Alignment:
Q  70 agaaatttaccaaaaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagac 169  Q
    |||||||||||||| |  ||| |||| ||| ||| | |||||||| | |||||||||| |||||| |||||||||| |||| |||||||||||||||||     
T  30776079 agaaatttaccaaagac-agtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaa 30776177  T
Q  170 ggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctat 267  Q
    |||||  ||||| ||||||  ||||||| ||| || || ||||| || |  | ||||||||| ||||  |||||||| || || ||||||||| ||||    
T  30776178 ggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtacgttgttccaaggtctat 30776275  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 43745828 - 43745982
Alignment:
Q  113 tgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactc 212  Q
    |||||||||||||| ||||| |||||||||| || ||| || ||||||||||||||    ||||||||||||||||| || ||||  || ||||| ||||    
T  43745828 tgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaaga---agttgttttgttgccttgatcattgtgaataatctcaactc 43745924  T
Q  213 tattgtgattctccagccacacagaaacacacgaataagtagttccaaggcctattcc 270  Q
    |||| || |  ||  ||||||||| |||||||||||| || ||||||||| |||||||    
T  43745925 tattttgttcatcttgccacacagcaacacacgaatacgttgttccaaggtctattcc 43745982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 28911288 - 28911363
Alignment:
Q  83 aaaatagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaag 158  Q
    |||| ||| ||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28911288 aaaacagtgttttcggggttggtggcagcctgattcttagcagcatcaccaatcaacctttgatcatcggtgaaag 28911363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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