View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_35 (Length: 263)
Name: NF0944_low_35
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 30258152 - 30258402
Alignment:
| Q |
1 |
taaaaaccttttaataactcttgaaatgcttcatttcctcaaaagcttcgagtttctgcggtgcttagcaatgcaccttttgtgttgaatctggattgtg |
100 |
Q |
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| T |
30258152 |
taaaaaccatttaataactcttgaaatgcttcatttcctcaaaagcttcgagtttctgcggtgcttagcaatgcaccttttgtgttgaatctggattgtg |
30258251 |
T |
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| Q |
101 |
atcaatacatcaataatagcaaggctcttagggagtctatgtgcttcctaatggaccctctacttggaaagaagaccgcttatgtccaatttccacgaag |
200 |
Q |
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| T |
30258252 |
atcaatacatcaataatagcaaggctcttagggagtctatgtgcttcctaatggaccctctacttggaaagaagaccgcttatgtccaatttccacgaag |
30258351 |
T |
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| Q |
201 |
gtttgatggcatcgacgataatgatagatatgccaaccacaacactatatt |
251 |
Q |
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| T |
30258352 |
gtttgatggcattgacgataatgatagatatgccaaccacaacactgtatt |
30258402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 15172000 - 15172137
Alignment:
| Q |
36 |
tcctcaaaagcttcgagtttctgcggtgcttagcaatgcaccttttgtgttgaatctggattgtgatcaatacatcaataatagcaaggctcttagggag |
135 |
Q |
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| T |
15172000 |
tcctcaaaaggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcattacatcaacaatagcaaggctctaagagag |
15172099 |
T |
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| Q |
136 |
tctatgtgcttcctaatggaccctctacttggaaagaa |
173 |
Q |
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| T |
15172100 |
gccatgtgcttccttatggatcctcaactagggaagaa |
15172137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 38720142 - 38720030
Alignment:
| Q |
97 |
tgtgatcaatacatcaataatagcaaggctcttagggagtctatgtgcttcctaatggaccctctacttggaaagaagaccgcttatgtccaatttccac |
196 |
Q |
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|||||||| |||||||||||||||||||||||||| ||| | ||||| || | |||||||||| |||||| ||||||| | ||||| |||||||||| |
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| T |
38720142 |
tgtgatcattacatcaataatagcaaggctcttagagaggccatgtgttttatgatggaccctcaacttggcaagaagatctgctatgtacaatttccac |
38720043 |
T |
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| Q |
197 |
gaaggtttgatgg |
209 |
Q |
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||| |||||||| |
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| T |
38720042 |
aaagatttgatgg |
38720030 |
T |
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