View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_37 (Length: 262)
Name: NF0944_low_37
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 54095332 - 54095100
Alignment:
| Q |
1 |
cacaagagacattgatccagatgtatcaatgaaatatcttgaaaaagattaagtgttcattagaacgatggatatttatgcttcaagaatctttgtgtgt |
100 |
Q |
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| T |
54095332 |
cacaagagacaatgatccagatgtatcattgaaatatcttgagaaagattaagtgttcattaaaacgatggatatttacgcttcaagaatctttgtgtgt |
54095233 |
T |
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| Q |
101 |
tcaatcttgccttcgaaaacaaacttcaaaactgacgcccaatccatataatttaatcattaaattgttcaaggctacttttcgtaaagtgactttcttg |
200 |
Q |
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|||| ||| |||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
54095232 |
tcaaccttaccttggaaaacaaacttaaaaactgacgaccaatccatataatttaatcactaaattgttcaaggctactttccgcaaagtgactttcttg |
54095133 |
T |
|
| Q |
201 |
atccaaaccttgatcataatccaagctagtatg |
233 |
Q |
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| T |
54095132 |
atccaaaccttgatcataatccaagctagtatg |
54095100 |
T |
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