View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_39 (Length: 254)
Name: NF0944_low_39
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 6026194 - 6026345
Alignment:
| Q |
1 |
ctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgag |
100 |
Q |
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| T |
6026194 |
ctgtgagcataaatgctatgattgttttccatgtgaagctactcaagtgccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgag |
6026293 |
T |
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| Q |
101 |
agttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtatt |
152 |
Q |
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| T |
6026294 |
agttggaaatgcaagtgtggtccttcattctatagtccttgaatattgtatt |
6026345 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 42824276 - 42824335
Alignment:
| Q |
79 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcattctatagtcc |
138 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttccttctacagtcc |
42824335 |
T |
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