View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_4 (Length: 486)
Name: NF0944_low_4
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 41524394 - 41523996
Alignment:
| Q |
29 |
agttgaatgaaaagaggatggaggataatactgcacttggtgtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaatcgaa |
128 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41524394 |
agttgaatgaaaagaggatggaggataatactcaacttggtgtgttgagaaaaatgattggtaaattggagcatgaagcttcggagctgaggaaatcgaa |
41524295 |
T |
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| Q |
129 |
gaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttaga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41524294 |
gaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggcgataaaaatgttttggctggagttgaggttaga |
41524195 |
T |
|
| Q |
229 |
aatggcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatgagaaacgtaagattgaga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41524194 |
aatggcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatgagaaacgtaagattgaga |
41524095 |
T |
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| Q |
329 |
tattgcttgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaatcttttgaagagtgtaggtgtctctg |
427 |
Q |
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| T |
41524094 |
tattgctcgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaatcttttgaagagtgtaggtgtctctg |
41523996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 41515443 - 41515045
Alignment:
| Q |
29 |
agttgaatgaaaagaggatggaggataatactgcacttggtgtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaatcgaa |
128 |
Q |
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||||||||||||||||||||| |||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41515443 |
agttgaatgaaaagaggatgggggataataatgaacttggtgtattgaggaaaatgattggtaaattggagcatgaagtttcggagttgaggaaatcgaa |
41515344 |
T |
|
| Q |
129 |
gaagaaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttaga |
228 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| | |
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| T |
41515343 |
gaagaaatggttagatgatggcaatgcttttgatgcgcttagaaataaggttcgtgtattggagggtgataagaatgctttggctggggttgaggttaaa |
41515244 |
T |
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| Q |
229 |
aatggcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatgagaaacgtaagattgaga |
328 |
Q |
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| T |
41515243 |
aatggcgaattgaaggaaatagtgaagaaatataaggaaactataagtaggttggggaaagaaaagagtaagttggctgatgagaaacgtaagattgaga |
41515144 |
T |
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| Q |
329 |
tattgcttgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgataccaatcttttgaagagtgtaggtgtctctg |
427 |
Q |
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|||||||||||||||||||||| ||||||| ||||||| |||||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
41515143 |
tattgcttgggtctatgtacaaaaagtttaaaggactgcttggaagactttcggggttggaggatgataccaaacttttgaagagtgtaggtgcctctg |
41515045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 34 - 274
Target Start/End: Complemental strand, 41499629 - 41499389
Alignment:
| Q |
34 |
aatgaaaagaggatggaggataatactgcacttggtgtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaatcgaagaaga |
133 |
Q |
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|||||||||| | |||||||||||| || ||||| |||| | ||| |||||||||||||||| ||||||||||||| |||| ||||||| | |||||| | |
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| T |
41499629 |
aatgaaaagatgctggaggataataatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttgaggaagttgaagaaaa |
41499530 |
T |
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| Q |
134 |
aatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatgg |
233 |
Q |
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||||||| ||||||||||||||| ||||| | | | | |||||||||||| ||||||||||||| |||| |||||||||| || || || || ||| |
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| T |
41499529 |
aatggtttgatgatagcaatgctcatgatgaggtacgaagcaaggttcgtgtaatggagggtgataagaatgatttggctggacttaagattgaaactgg |
41499430 |
T |
|
| Q |
234 |
cgaagtgaaggaaacggtgaagaaaattttggaaactataa |
274 |
Q |
| |
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||| |||||||||| ||||||| | |||||||||||||| |
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| T |
41499429 |
tgaattgaaggaaacaatgaagaagaatttggaaactataa |
41499389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 34 - 274
Target Start/End: Complemental strand, 41503822 - 41503582
Alignment:
| Q |
34 |
aatgaaaagaggatggaggataatactgcacttggtgtgttgagaaaaatgattggtaaattggagcatgaagtttcggagctgaggaaatcgaagaaga |
133 |
Q |
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|||||||||| | |||||||||||| | ||||| |||| | ||| |||||||||||||||| ||||||||||||| |||| | |||| | |||||| | |
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| T |
41503822 |
aatgaaaagatggtggaggataataacgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttaaggaggttgaagaaaa |
41503723 |
T |
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| Q |
134 |
aatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatgg |
233 |
Q |
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||| |||||| |||||| |||| ||||| |||| | | ||||||| ||| |||||||||||||||||| |||||||| || || ||| || ||| |
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| T |
41503722 |
aattgttagaaaatagcagtgctcatgatgagcttcgaagcaaggttcatgttctggagggtgataaaaatgatttggctgaccttaagattaaaactgg |
41503623 |
T |
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| Q |
234 |
cgaagtgaaggaaacggtgaagaaaattttggaaactataa |
274 |
Q |
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||| |||||||||| ||||||| | |||||||||||||| |
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| T |
41503622 |
tgaattgaaggaaacaatgaagaagaatttggaaactataa |
41503582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 41519439 - 41519327
Alignment:
| Q |
136 |
tggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatggcg |
235 |
Q |
| |
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|||||||||||||| |||||| |||||| |||| | | | |||| |||||||||||| ||| || |||| |||||||||| ||||| ||| |||||||| |
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| T |
41519439 |
tggttagatgatagtaatgctcttgatgagcttcgaagcatggttggtgtattggaggttgaaaagaatgctttggctggaattgagattaaaaatggcg |
41519340 |
T |
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| Q |
236 |
aagtgaaggaaac |
248 |
Q |
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| T |
41519339 |
aattgaaggaaac |
41519327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 310
Target Start/End: Complemental strand, 41504074 - 41503897
Alignment:
| Q |
133 |
aaatggttagatgatagcaatgcttttgatgcgcttaggaataaggttcgtgtattggagggtgataaaaatgttttggctggagttgaggttagaaatg |
232 |
Q |
| |
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|||||||| |||||||| |||||| |||||| |||| | |||||| |||||||||||| ||| ||||||| |||||||| | || || || |||| |
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| T |
41504074 |
aaatggtttgatgatagaaatgctcttgatgagcttcaaaggaaggttggtgtattggaggatgaaaaaaatgatttggctgaaattaagagtaaaaata |
41503975 |
T |
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| Q |
233 |
gcgaagtgaaggaaacggtgaagaaaattttggaaactataaataggttggggaaagaaaagagtaagttggctgatg |
310 |
Q |
| |
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||||| |||||| ||| |||| ||| ||||| |||||||| |||| |||||||||| || || |||||||||| |
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| T |
41503974 |
gcgaattgaaggcaactgtgacgaagtatttggcaactataagcgagttgaggaaagaaaacagcaaattggctgatg |
41503897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 41503548 - 41503473
Alignment:
| Q |
323 |
ttgagatattgcttgggtctatgtacaagaagtttagaggactggttggaagactttcgagattggaggatgatac |
398 |
Q |
| |
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|||| ||||| ||||||||| | ||||| ||||| ||||||||| ||||||| |||| || |||||||||||||| |
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| T |
41503548 |
ttgatatattacttgggtctttttacaaaaagttcagaggactgactggaagagtttcaaggttggaggatgatac |
41503473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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