View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_41 (Length: 251)
Name: NF0944_low_41
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 46942267 - 46942025
Alignment:
| Q |
1 |
aaggttaagcctgaaaaaaggaaacagattgttgcccctgccaataaaagaacacgagcaagcaacagcaatggaggtccaatgccacctgctaaagctg |
100 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46942267 |
aaggttaagcctgagaaaaggaaacagattgttgtccctgccaataaaagaacacgagcaagcaacagcaatggaggtccaatgccacctgctaaagctg |
46942168 |
T |
|
| Q |
101 |
gacgtttgactaatgcatatgtatcatctttccctgccgctcctacatttgttagatctccatcacacgggcaatacccagctgctcttccaccgtatcc |
200 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46942167 |
gacgtttgaccaatgcatatgtatcatctttccctgccgcttctacatttgttagatctccatcacacgggcaatacccagctgctcttccactgtatcc |
46942068 |
T |
|
| Q |
201 |
ttccccaccccacatgtatggaagcagaagtccatcctatgct |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46942067 |
ttccccaccccacatgtatggaagcagaagtccatcctatgct |
46942025 |
T |
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