View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_42 (Length: 250)
Name: NF0944_low_42
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39985261 - 39985480
Alignment:
| Q |
1 |
ctttccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttttacttgtggggctgggaataggggctac |
100 |
Q |
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| T |
39985261 |
ctttccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttttacttgtggggctgggaataggggctac |
39985360 |
T |
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| Q |
101 |
cccaatgataagtatactaaaggacatggtcaataatttcaaggcaatggaagaggaagatgggtttgcaatggaggaagggtcaccgatgacaccaaac |
200 |
Q |
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| T |
39985361 |
cccaatgataagtatactaaaggacatggtcaataatttcaaggcaatggaagaggaagatgggtttgcaatggaggaagggtcaccgatgacaccaaac |
39985460 |
T |
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| Q |
201 |
cagaaagactctaggttcag |
220 |
Q |
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| T |
39985461 |
cagaaagactctaggttcag |
39985480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 44917591 - 44917741
Alignment:
| Q |
4 |
tccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttttacttgtggggctgggaataggggctacccc |
103 |
Q |
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| T |
44917591 |
tccctaaagttttgatcgatggtccttatggagcgcctgcacaagactacaagcaatatgatgtagttttacttgtaggcctaggaattggggctacccc |
44917690 |
T |
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| Q |
104 |
aatgataagtatactaaaggacatggtcaataatttcaaggcaatggaaga |
154 |
Q |
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| T |
44917691 |
aatgataagtatactaaaggacattgtgaataatttcaaggctatggaaga |
44917741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 44892185 - 44892338
Alignment:
| Q |
4 |
tccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttttacttgtggggctgggaataggggctacccc |
103 |
Q |
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|||||||||||||| |||| ||||| ||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
44892185 |
tccctaaagttttggttgacggtccttatggagcgcctgcacaagactacaaaaaatatgaggtggttttacttgtgggactgggaattggggctacccc |
44892284 |
T |
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| Q |
104 |
aatgataagtatactaaaggacatggtcaataatttcaaggcaatggaagagga |
157 |
Q |
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| T |
44892285 |
aatgataagtatagtaaaggacatattgaataatatcaaggccaaggaagagga |
44892338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 44900842 - 44900982
Alignment:
| Q |
5 |
ccctaaagttttgattgatggtccgtatggagcgccagcacaagactacagggagtatgaggtggttttacttgtggggctgggaataggggctacccca |
104 |
Q |
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| T |
44900842 |
ccctaaagttcggattgacggtccttatggagcgcctgcacaggactacaagcagtacgaggtggttttacttgttggcctgggaattggggctacccca |
44900941 |
T |
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| Q |
105 |
atgataagtatactaaaggacatggtcaataatttcaaggc |
145 |
Q |
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| T |
44900942 |
atgataagtataataaaggacattttgaataattccaaggc |
44900982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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