View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0944_low_46 (Length: 218)

Name: NF0944_low_46
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0944_low_46
NF0944_low_46
[»] chr1 (1 HSPs)
chr1 (1-204)||(30258152-30258355)
[»] chr2 (1 HSPs)
chr2 (36-173)||(15172000-15172137)
[»] chr8 (1 HSPs)
chr8 (97-196)||(38720043-38720142)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 30258152 - 30258355
Alignment:
1 taaaaaccttttaataactcttgaaatgcttcatttcctcaaaagcttcgagtttctgcggtgcttagcaatgcaccttttgtgttgaatctggattgtg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30258152 taaaaaccatttaataactcttgaaatgcttcatttcctcaaaagcttcgagtttctgcggtgcttagcaatgcaccttttgtgttgaatctggattgtg 30258251  T
101 atcaatacatcaataatagcaaggctcttagggagtctatgtgcttcctaatggaccctctacttggaaagaagaccgcttatgtccaatttccacgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30258252 atcaatacatcaataatagcaaggctcttagggagtctatgtgcttcctaatggaccctctacttggaaagaagaccgcttatgtccaatttccacgaag 30258351  T
201 gttt 204  Q
    ||||    
30258352 gttt 30258355  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 15172000 - 15172137
Alignment:
36 tcctcaaaagcttcgagtttctgcggtgcttagcaatgcaccttttgtgttgaatctggattgtgatcaatacatcaataatagcaaggctcttagggag 135  Q
    |||||||||| ||||||||||||| |||||||  |||||||| ||  |||||||||| ||||||||||| |||||||| |||||||||||||| || |||    
15172000 tcctcaaaaggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcattacatcaacaatagcaaggctctaagagag 15172099  T
136 tctatgtgcttcctaatggaccctctacttggaaagaa 173  Q
     | ||||||||||| ||||| |||| ||| || |||||    
15172100 gccatgtgcttccttatggatcctcaactagggaagaa 15172137  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 38720142 - 38720043
Alignment:
97 tgtgatcaatacatcaataatagcaaggctcttagggagtctatgtgcttcctaatggaccctctacttggaaagaagaccgcttatgtccaatttccac 196  Q
    |||||||| |||||||||||||||||||||||||| ||| | ||||| ||  | |||||||||| |||||| ||||||| |   ||||| ||||||||||    
38720142 tgtgatcattacatcaataatagcaaggctcttagagaggccatgtgttttatgatggaccctcaacttggcaagaagatctgctatgtacaatttccac 38720043  T

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