View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_5 (Length: 475)
Name: NF0944_low_5
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 59 - 405
Target Start/End: Complemental strand, 6467795 - 6467448
Alignment:
| Q |
59 |
ctattctctaaccattgatctcaatttcaacccattgctttgtttgaaacttgtagattcataatgtatttccacagagtgaaatctaacatggttagtg |
158 |
Q |
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| T |
6467795 |
ctattctctaaccattgatctcaatttcaacccattgctttgtttgaaacttgtagattcataatgtatttccacagagtgaaatctaacatggttagtg |
6467696 |
T |
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| Q |
159 |
ccaaactatcttgacattctcactttcattttctttgaatattatctccttttata-accatatgttcattattatttttcatggcagatttgtgttttg |
257 |
Q |
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| T |
6467695 |
ccaaactatcttgacattctcactttcattttctttgaatattatctccttttatataccatatgttcattattatttttcatggcagatttgtgctttg |
6467596 |
T |
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| Q |
258 |
aaagtggatacttattatgatggatggtttcaaactatcttcaaaatactgaggaaaatcaaaggtatgttttttgtctcctttgtctatcatattttgg |
357 |
Q |
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| T |
6467595 |
aaagtggatacttattatgatggatggtttcaaactatcttcaaaatactgaggaaaatcaaaggtatgttttttgtctcctttgtctatcatattttgg |
6467496 |
T |
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| Q |
358 |
attaaatataatttatgtagtataaaaacttctttgatctcatgtagt |
405 |
Q |
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| T |
6467495 |
attaaatataacttatgtagtataaaaacttctttgatctcatgtagt |
6467448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 6467467 - 6467405
Alignment:
| Q |
413 |
cttctttgatctcatgtagtataaaaacttctaaacaccagttcaatctctcttttaaaaagt |
475 |
Q |
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| T |
6467467 |
cttctttgatctcatgtagtgtaaaaacttctaaacaccaattcaatctctcttttaaaaagt |
6467405 |
T |
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