View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0944_low_6 (Length: 460)
Name: NF0944_low_6
Description: NF0944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0944_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 28 - 394
Target Start/End: Complemental strand, 38072967 - 38072603
Alignment:
| Q |
28 |
cattatcatggttcttcaacaatattaatattaaagatctcatgatctatcatgattttaattacatgattgataatgttagtcaaggaagtttggatta |
127 |
Q |
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| T |
38072967 |
cattatcatggttcttcaacaatattaatattaaagatctcatgatctatcatgattttaattacatgattgataatgttagtcaaggaagtttggatta |
38072868 |
T |
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| Q |
128 |
taaaccttgcataatcaaatctcacattcttcaatgcaaaactataattttgcataacattcctgaaaaactcttcacacaaagtatgtaaaacaaagta |
227 |
Q |
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| T |
38072867 |
taaaccttgcataatcaaatttcacattcttcaatgcaaaactataattttgcataacattcctgaaaaactcttcacacaaagtatgtaaaacaaagta |
38072768 |
T |
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| Q |
228 |
actataccattcgacaaacattaagatgacaagctttaatatgctcaaacagatcacttaaaaaattcgacaaattca-taacaactttcctcatatctt |
326 |
Q |
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| T |
38072767 |
--tataccattcgacaaacattaagatgacaagctttaatatgctcaaacagatcactt-aaaaattcgacaaattcactaacaactttcctcatatctt |
38072671 |
T |
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| Q |
327 |
ttccatcaactccaatcaaatacgattttttccctcccacgatgatactcacttgaattgtaactgca |
394 |
Q |
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| T |
38072670 |
ttccatcaactccaatcaaaaacgattttttccctcccatgatgatactcacttgaatcgtaactgca |
38072603 |
T |
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