View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_high_1 (Length: 989)
Name: NF0945_high_1
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 598 - 975
Target Start/End: Complemental strand, 39077714 - 39077337
Alignment:
| Q |
598 |
tcaaactctcagtggttgtcattatcaacaagcaagtgcatcaataatcacaaaacaagaacaaattttgaagcatatacattgactcaagtggcatcaa |
697 |
Q |
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| T |
39077714 |
tcaaactctcagtggttgtcattatcaacaagcaagtgcatcaataatcacaaaacaagaacaaattttgaagcatatacattgactcaagtggcatcaa |
39077615 |
T |
|
| Q |
698 |
atttcacactacacaaatatcaatatgcatacgcaagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggatt |
797 |
Q |
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| T |
39077614 |
atttcacactacacaaatatcaatatgcatacgcaagaaacagaaacacaatagaactatctttacaaattcaaagacacaaaatttatacaagaggatt |
39077515 |
T |
|
| Q |
798 |
aatgggaatgaagagcacaggaggagaaatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacact |
897 |
Q |
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| T |
39077514 |
aatgggaatgaagagcacaggaggagaaatagttcaagttcaaggaggccacattgtaagggcgacaggtagaaaagacagacatagtaaggtatacact |
39077415 |
T |
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| Q |
898 |
gcgaaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctc |
975 |
Q |
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| T |
39077414 |
gcgaaaggtcctcgtgatcgacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaagaccgtctc |
39077337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 97 - 415
Target Start/End: Complemental strand, 39078223 - 39077903
Alignment:
| Q |
97 |
tgaaccccatgtgacatacatcactgatttcaatgtcctattctagtttgttgtgagttttaccatttcccattacaaacaatcttcaacttgaaagctt |
196 |
Q |
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| T |
39078223 |
tgaaccccatgtgacatacatcactgatttcaatgtcctattctagtttgttgtgagttttaccatttcccattacaaacaatcttcaacttgaaagctt |
39078124 |
T |
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| Q |
197 |
aaaaattctttatattatctttacaaaattttgggattctcatataataataaacaacac--caattaacaatctactaaattttgtttactatgtcctt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39078123 |
aaaaattctttatattatctttacaaaattttgggattctcatataataataaacaacacaccaattaacaatctactaaattttgtttactatgtcctt |
39078024 |
T |
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| Q |
295 |
ttactatcttttagcacatgagttggttacaaatcccataaacaaaaaagcattgagtaattaacttttgttatcttgcatatgcatatgcatattttag |
394 |
Q |
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| T |
39078023 |
ttactatcttttagcacatgagttggttacaaatcccataaacaaaaaagcattgagtaattaacttttgttatcttgcatatgcatatgcatattttag |
39077924 |
T |
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| Q |
395 |
agtactatattgctattacat |
415 |
Q |
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||||||||||||||||||||| |
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| T |
39077923 |
agtactatattgctattacat |
39077903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 439 - 537
Target Start/End: Complemental strand, 39077873 - 39077774
Alignment:
| Q |
439 |
aggatcaatataagtggtagaattaagggttattttcagcttcagaaaaa-gtatccacatgaagaaattctataagaaatccaacatcaattagaagag |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39077873 |
aggatcaatataagtggtagaattaagggttattttcagcttcagaaaaaagtatccacatgaagaaattctataagaaatccaacatcaattagaagag |
39077774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 817 - 968
Target Start/End: Complemental strand, 30768521 - 30768370
Alignment:
| Q |
817 |
ggaggagaaatagttcaagttcaaggaggccacattgtaagggcaacaggtagaaaagacagacatagtaaggtatacactgcgaaaggtcctcgtgatc |
916 |
Q |
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|||||||| ||||||||||| ||||||| ||||| || | || || |||| |||||| | || || ||||| ||||| | ||||||||||| |||| |
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| T |
30768521 |
ggaggagagatagttcaagtagaaggaggacacatagttcgagccaccggtaaaaaagatcgtcacagcaaggtttacacatcaaaaggtcctcgcgatc |
30768422 |
T |
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| Q |
917 |
gacgtgttcgattatcagcacacacagcaattcaattctatgatgttcaaga |
968 |
Q |
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| | |||||| | |||||||||||||| || ||||||| ||||||||||| |
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| T |
30768421 |
gcagggttcgactctcagcacacacagccatcgaattctacgatgttcaaga |
30768370 |
T |
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