View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_high_15 (Length: 430)

Name: NF0945_high_15
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_high_15
NF0945_high_15
[»] scaffold0722 (2 HSPs)
scaffold0722 (216-342)||(5725-5850)
scaffold0722 (1-31)||(5511-5541)
[»] chr5 (5 HSPs)
chr5 (99-143)||(41988173-41988217)
chr5 (1-31)||(6887163-6887193)
chr5 (1-31)||(10924118-10924148)
chr5 (1-31)||(28618702-28618732)
chr5 (1-31)||(29310339-29310369)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-31)||(12188-12218)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-31)||(36628-36658)
[»] chr8 (7 HSPs)
chr8 (1-31)||(5457170-5457200)
chr8 (1-31)||(8054792-8054822)
chr8 (1-31)||(9992766-9992796)
chr8 (1-31)||(16996873-16996903)
chr8 (1-31)||(32412889-32412919)
chr8 (1-31)||(44295415-44295445)
chr8 (99-147)||(8054889-8054937)
[»] chr7 (6 HSPs)
chr7 (1-31)||(135130-135160)
chr7 (1-31)||(8611608-8611638)
chr7 (1-31)||(23732378-23732408)
chr7 (1-31)||(35661623-35661653)
chr7 (1-31)||(40775366-40775396)
chr7 (1-31)||(49167025-49167055)
[»] chr6 (3 HSPs)
chr6 (1-31)||(13234093-13234123)
chr6 (1-31)||(16913427-16913457)
chr6 (1-31)||(23843409-23843439)
[»] chr4 (7 HSPs)
chr4 (1-31)||(4634382-4634412)
chr4 (1-31)||(9661952-9661982)
chr4 (1-31)||(14542497-14542527)
chr4 (1-31)||(23067833-23067863)
chr4 (1-31)||(32189079-32189109)
chr4 (1-31)||(50003161-50003191)
chr4 (2-31)||(34115637-34115666)
[»] chr3 (8 HSPs)
chr3 (1-31)||(1165381-1165411)
chr3 (1-31)||(3088648-3088678)
chr3 (1-31)||(14741310-14741340)
chr3 (1-31)||(41882394-41882424)
chr3 (1-31)||(43029782-43029812)
chr3 (1-31)||(47914578-47914608)
chr3 (1-31)||(54240185-54240215)
chr3 (99-143)||(1220296-1220340)
[»] chr2 (8 HSPs)
chr2 (1-31)||(3390531-3390561)
chr2 (1-31)||(7640341-7640371)
chr2 (1-31)||(25771544-25771574)
chr2 (1-31)||(36508029-36508059)
chr2 (1-31)||(38822172-38822202)
chr2 (1-31)||(43566973-43567003)
chr2 (1-31)||(44167695-44167725)
chr2 (99-147)||(7640437-7640485)
[»] chr1 (2 HSPs)
chr1 (1-31)||(4564616-4564646)
chr1 (1-31)||(22344897-22344927)


Alignment Details
Target: scaffold0722 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 216 - 342
Target Start/End: Original strand, 5725 - 5850
Alignment:
Q  216 ttatcgaatatattatatacttgacaattggtggtgaaagaaaaaagtatacatatatcctccttnnnnnnnnnnngtttacatattatggtcctgaact 315  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  5725 ttatcgaatatattatataattgacaattg-tggtggaagaaaaaagtatacatatatcctccttaaaaaaaaaaagtttacatattatggtcctgaact 5823  T
Q  316 cattatcatcatcatgtactacatttt 342  Q
    |||||||||||||||||||||||||||    
T  5824 cattatcatcatcatgtactacatttt 5850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5511 - 5541
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  5511 aaccaacgtcgcacgaagacgacgaaatcac 5541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 41988217 - 41988173
Alignment:
Q  99 tagaggggcaattttgagtcaaaaatttatcctaaatcacccctc 143  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||||    
T  41988217 tagaggggcgattttgaatcaaaaattgatcctaaatcacccctc 41988173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6887163 - 6887193
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  6887163 aaccaacgtcgcacgaagacgacgaaatcac 6887193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 10924118 - 10924148
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  10924118 aaccaacgtcgcacgaagacgacgaaatcac 10924148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 28618732 - 28618702
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  28618732 aaccaacgtcgcacgaagacgacgaaatcac 28618702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 29310339 - 29310369
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  29310339 aaccaacgtcgcacgaagacgacgaaatcac 29310369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 12188 - 12218
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  12188 aaccaacgtcgcacgaagacgacgaaatcac 12218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 36658 - 36628
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  36658 aaccaacgtcgcacgaagacgacgaaatcac 36628  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 5457200 - 5457170
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  5457200 aaccaacgtcgcacgaagacgacgaaatcac 5457170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8054792 - 8054822
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  8054792 aaccaacgtcgcacgaagacgacgaaatcac 8054822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9992796 - 9992766
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  9992796 aaccaacgtcgcacgaagacgacgaaatcac 9992766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 16996873 - 16996903
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  16996873 aaccaacgtcgcacgaagacgacgaaatcac 16996903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32412919 - 32412889
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  32412919 aaccaacgtcgcacgaagacgacgaaatcac 32412889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 44295445 - 44295415
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  44295445 aaccaacgtcgcacgaagacgacgaaatcac 44295415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 8054889 - 8054937
Alignment:
Q  99 tagaggggcaattttgagtcaaaaatttatcctaaatcacccctccaac 147  Q
    |||||||  ||||||| |||||||||| | |||||||||||||||||||    
T  8054889 tagagggataattttgggtcaaaaattgaccctaaatcacccctccaac 8054937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 135130 - 135160
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  135130 aaccaacgtcgcacgaagacgacgaaatcac 135160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8611608 - 8611638
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  8611608 aaccaacgtcgcacgaagacgacgaaatcac 8611638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 23732378 - 23732408
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  23732378 aaccaacgtcgcacgaagacgacgaaatcac 23732408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 35661653 - 35661623
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  35661653 aaccaacgtcgcacgaagacgacgaaatcac 35661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 40775396 - 40775366
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  40775396 aaccaacgtcgcacgaagacgacgaaatcac 40775366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 49167055 - 49167025
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  49167055 aaccaacgtcgcacgaagacgacgaaatcac 49167025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13234093 - 13234123
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  13234093 aaccaacgtcgcacgaagacgacgaaatcac 13234123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 16913457 - 16913427
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  16913457 aaccaacgtcgcacgaagacgacgaaatcac 16913427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 23843409 - 23843439
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  23843409 aaccaacgtcgcacgaagacgacgaaatcac 23843439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 4634412 - 4634382
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  4634412 aaccaacgtcgcacgaagacgacgaaatcac 4634382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 9661982 - 9661952
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  9661982 aaccaacgtcgcacgaagacgacgaaatcac 9661952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 14542497 - 14542527
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  14542497 aaccaacgtcgcacgaagacgacgaaatcac 14542527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 23067833 - 23067863
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  23067833 aaccaacgtcgcacgaagacgacgaaatcac 23067863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32189109 - 32189079
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  32189109 aaccaacgtcgcacgaagacgacgaaatcac 32189079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 50003161 - 50003191
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  50003161 aaccaacgtcgcacgaagacgacgaaatcac 50003191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 34115637 - 34115666
Alignment:
Q  2 accaacgtcgcacgaagacgacgaaatcac 31  Q
    ||||||||||||||||||||||||||||||    
T  34115637 accaacgtcgcacgaagacgacgaaatcac 34115666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 1165381 - 1165411
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  1165381 aaccaacgtcgcacgaagacgacgaaatcac 1165411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 3088648 - 3088678
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  3088648 aaccaacgtcgcacgaagacgacgaaatcac 3088678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 14741310 - 14741340
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  14741310 aaccaacgtcgcacgaagacgacgaaatcac 14741340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 41882394 - 41882424
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  41882394 aaccaacgtcgcacgaagacgacgaaatcac 41882424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 43029812 - 43029782
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  43029812 aaccaacgtcgcacgaagacgacgaaatcac 43029782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 47914578 - 47914608
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  47914578 aaccaacgtcgcacgaagacgacgaaatcac 47914608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 54240215 - 54240185
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  54240215 aaccaacgtcgcacgaagacgacgaaatcac 54240185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 1220296 - 1220340
Alignment:
Q  99 tagaggggcaattttgagtcaaaaatttatcctaaatcacccctc 143  Q
    ||||||||  ||||||| ||||||||| |||||||||||||||||    
T  1220296 tagaggggtgattttgaatcaaaaattgatcctaaatcacccctc 1220340  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 3390561 - 3390531
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  3390561 aaccaacgtcgcacgaagacgacgaaatcac 3390531  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 7640341 - 7640371
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  7640341 aaccaacgtcgcacgaagacgacgaaatcac 7640371  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 25771574 - 25771544
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  25771574 aaccaacgtcgcacgaagacgacgaaatcac 25771544  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 36508059 - 36508029
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  36508059 aaccaacgtcgcacgaagacgacgaaatcac 36508029  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 38822202 - 38822172
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  38822202 aaccaacgtcgcacgaagacgacgaaatcac 38822172  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 43567003 - 43566973
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  43567003 aaccaacgtcgcacgaagacgacgaaatcac 43566973  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 44167695 - 44167725
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  44167695 aaccaacgtcgcacgaagacgacgaaatcac 44167725  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 7640437 - 7640485
Alignment:
Q  99 tagaggggcaattttgagtcaaaaatttatcctaaatcacccctccaac 147  Q
    ||||||||  |||||| |||||||||| | |||||||||||||||||||    
T  7640437 tagaggggtgattttgggtcaaaaattgaccctaaatcacccctccaac 7640485  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 4564646 - 4564616
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  4564646 aaccaacgtcgcacgaagacgacgaaatcac 4564616  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 22344897 - 22344927
Alignment:
Q  1 aaccaacgtcgcacgaagacgacgaaatcac 31  Q
    |||||||||||||||||||||||||||||||    
T  22344897 aaccaacgtcgcacgaagacgacgaaatcac 22344927  T

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