View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_high_2 (Length: 767)
Name: NF0945_high_2
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 36 - 476
Target Start/End: Original strand, 32724253 - 32724693
Alignment:
| Q |
36 |
tatagagagatatcaaagaggggatagagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaataaagaattttcactt |
135 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
32724253 |
tatagagagatatcagagaggggatagagattcatgagtataaattttggttccctatattaactttcttctggtttctttcaataaagaattttcactt |
32724352 |
T |
|
| Q |
136 |
taactattatttgttggtgatacaccttcaacattgatggtttacattgtcaatttctaattgaagggacaaaagtcatctaac-gaaacataggttaat |
234 |
Q |
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| T |
32724353 |
tcactattatttgttggtgatacaccttcaacattgatggtttacattgccaatttctaattgaagggacaaaagtcatctaacggaaacataagttaat |
32724452 |
T |
|
| Q |
235 |
tgaaaaaagtgaaatcacttacagaagaggaaaaaatcattgccaagtatgtttctaaattttaattttaatatctttttctttcagaattctttcatga |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
32724453 |
tgaaaaaagtgaaatcacttacagaagaggaaaaaatcattgccaagtatgtttctaaattttaattttaatatc-gtttctttcaaaattctttcatga |
32724551 |
T |
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| Q |
335 |
ataatattaatgatacaacatttactttcaccactacgttcattccttctatttgttttttaaattaatttcagaaatagttcaacttccacttccgtgc |
434 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32724552 |
ataatattcatgatacaacatttactttcaccactacgttcattccttctatctgttttttaaattaatttcagaaatagttcgacttccacttccgtgc |
32724651 |
T |
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| Q |
435 |
aataacacgactaccatggcggaaatcgggaaatcatccatc |
476 |
Q |
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| T |
32724652 |
aataacacgactaccatggcggaaatcgggaaatcatccatc |
32724693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 537 - 666
Target Start/End: Original strand, 32724754 - 32724883
Alignment:
| Q |
537 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtag |
636 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
32724754 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacataagttatttgggttaacaggctttttagaaaggtgttgaaggtaa |
32724853 |
T |
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| Q |
637 |
tggatgttaaaagattctttctcagcattt |
666 |
Q |
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| T |
32724854 |
tggatgttaaaagattctttctcagcattt |
32724883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 61 - 362
Target Start/End: Original strand, 4001641 - 4001937
Alignment:
| Q |
61 |
agagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaa---------taaagaattttcactttaactattatttgttg |
151 |
Q |
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| T |
4001641 |
agagattcatgactataaattttagttctctatgttaacatccttctggtttctttcaacttttttatttaagaattttcacttttactattatttgttg |
4001740 |
T |
|
| Q |
152 |
gtgatacaccttcaacattgatggtttacatt-gtcaatttctaattgaagggacaaaagtcatctaacgaaacataggttaattgaaaaaa--gtgaaa |
248 |
Q |
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| T |
4001741 |
gttatacaccttcaatattgatggtttacatttgtcagtttctaattgacgg------------------aaacataagttaattgaaaaaaaagtgaaa |
4001822 |
T |
|
| Q |
249 |
tcacttacagaagaggaaaaaat-cattgccaagtatgtttctaaattttaattttaatatctttttctttcagaattctttcatgaataatattaatga |
347 |
Q |
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| T |
4001823 |
tcacttacataagaggaaagaagacaatgccaagtatgtttctaaattttaattttaatatctttctctttcaaaattcattcatgaataatattcataa |
4001922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 537 - 666
Target Start/End: Original strand, 32723299 - 32723430
Alignment:
| Q |
537 |
ggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttgggt--taacgggctttttagaaaggggttgaaggt |
634 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||| || |||| | |||| ||||||| ||||||||| |
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| T |
32723299 |
ggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttgagttataacatgtttttgagaaaggtgttgaaggt |
32723398 |
T |
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| Q |
635 |
agtggatgttaaaagattctttctcagcattt |
666 |
Q |
| |
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| T |
32723399 |
agtggatgttacaagattctttatcagcattt |
32723430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 566 - 660
Target Start/End: Original strand, 4001942 - 4002036
Alignment:
| Q |
566 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctca |
660 |
Q |
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||||| |||| |||||||||| || |||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctca |
4002036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 541 - 666
Target Start/End: Original strand, 15720028 - 15720156
Alignment:
| Q |
541 |
tacatgtttattagagaaagagtaattttt-gttttgtatcaatggtgacacaagttatttgggtta--acgggctttttagaaaggggttgaaggtagt |
637 |
Q |
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|||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| || | |||| ||||||| |||||||||||| |
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| T |
15720028 |
tacaggtttagtagagaaagagtaattttttgttttgtattaatggtgacacaagttatttgggttataacaagtttttgagaaaggtgttgaaggtagt |
15720127 |
T |
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| Q |
638 |
ggatgttaaaagattctttctcagcattt |
666 |
Q |
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|||||||| ||||||||||||||| |||| |
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| T |
15720128 |
ggatgttacaagattctttctcagtattt |
15720156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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