View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_high_22 (Length: 379)

Name: NF0945_high_22
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_high_22
NF0945_high_22
[»] chr3 (1 HSPs)
chr3 (330-371)||(50241389-50241430)
[»] scaffold0211 (1 HSPs)
scaffold0211 (330-370)||(18589-18629)
[»] chr4 (2 HSPs)
chr4 (330-370)||(314233-314273)
chr4 (330-370)||(6554451-6554491)
[»] chr2 (1 HSPs)
chr2 (330-370)||(31965977-31966017)
[»] scaffold0114 (1 HSPs)
scaffold0114 (330-366)||(36954-36990)
[»] chr1 (2 HSPs)
chr1 (330-370)||(45918364-45918404)
chr1 (330-369)||(49881712-49881751)
[»] chr8 (1 HSPs)
chr8 (330-369)||(41527166-41527205)
[»] chr5 (1 HSPs)
chr5 (330-370)||(9024862-9024902)


Alignment Details
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 50241430 - 50241389
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggttaa 371  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50241430 aatatcaaatgaagacaccatatgtttaaaaaggttggttaa 50241389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 18589 - 18629
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 370  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18589 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 18629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 314273 - 314233
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 370  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  314273 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 314233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 6554491 - 6554451
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 370  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  6554491 aatatcaaatgaagacaccatatatttaaaaaggttagtta 6554451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 31965977 - 31966017
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 370  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31965977 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 31966017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 36990 - 36954
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttg 366  Q
    |||||||||||||||||||||||||||||||||||||    
T  36990 aatatcaaatgaagacaccatatgtttaaaaaggttg 36954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 45918364 - 45918404
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 370  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  45918364 aatatcaaatgaagacaccatatgtttaaaaaggttagtta 45918404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 330 - 369
Target Start/End: Complemental strand, 49881751 - 49881712
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggtt 369  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  49881751 aatatcaaatgaagacaccatacgtttaaaacggttggtt 49881712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 41527166 - 41527205
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggtt 369  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  41527166 aatatcaaatgaagacaccatatatttaaaaaggttggtt 41527205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 9024902 - 9024862
Alignment:
Q  330 aatatcaaatgaagacaccatatgtttaaaaaggttggtta 370  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  9024902 aatatcaaacgaagacaccatatgtttaaaaaagttggtta 9024862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University