View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_high_41 (Length: 273)
Name: NF0945_high_41
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_high_41 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 11755731 - 11755978
Alignment:
| Q |
18 |
atgctccactagcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11755731 |
atgctccactagcaaagttacaacataagtatctaagtaaacttctggtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaa |
11755830 |
T |
|
| Q |
118 |
agtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11755831 |
agtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaag |
11755930 |
T |
|
| Q |
218 |
gcatacagccttatgctcttttggttttcacctactttggtctctgct |
265 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11755931 |
gcatacagccttatgctcttttggttttcacctactttggtctctgct |
11755978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 12094204 - 12093957
Alignment:
| Q |
18 |
atgctccactagcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
12094204 |
atgctccactagcaaagttacaacataagtatcttagtaaacttctggtggcccaagatgaaaggttgaaggctagttctgaggctctggtgaatatgaa |
12094105 |
T |
|
| Q |
118 |
agtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
12094104 |
agtgctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaacaaaaattgttatcttcagtgttattacaaaag |
12094005 |
T |
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| Q |
218 |
gcatacagccttatgctcttttggttttcacctactttggtctctgct |
265 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12094004 |
gcatacagccttattctcttttggttttcacctactttggtctctgct |
12093957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 11739973 - 11739745
Alignment:
| Q |
21 |
ctccactagcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaaagt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||| |
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| T |
11739973 |
ctccactagcaaagttacaacataagtatctaagcaaacttctcgtggcacaagatgaaaggttaaaggctagttccgaggctctagtgaatgtgaaagt |
11739874 |
T |
|
| Q |
121 |
gctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaaggca |
220 |
Q |
| |
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| | ||||||||||||||||||| |||||||||||| | || |||| ||| ||| || ||| ||||| ||||||||||||||| | ||||| ||| |
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| T |
11739873 |
gttgaagttatatgcatgggaaacccattttaaaaatgctatagaaagcctcagattttccgaactcaaattcttatcttcagtgctactgcaaaaagca |
11739774 |
T |
|
| Q |
221 |
tacagccttatgctcttttggttttcacc |
249 |
Q |
| |
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|||| | || ||||| ||||||||||| |
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|
| T |
11739773 |
tacaatgtcattctcttctggttttcacc |
11739745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 11662910 - 11663113
Alignment:
| Q |
21 |
ctccactagcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaaagt |
120 |
Q |
| |
|
|||||||||||||||| ||||| |||| || ||| ||||| | ||||| ||||| || || ||||| ||||||||||||||||| |||| |||||||| |
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| T |
11662910 |
ctccactagcaaagttgcaacacaagtttcagagtgaacttatggtggcacaagacgagagattgaaggctagttctgaggctcttgtgagtatgaaagt |
11663009 |
T |
|
| Q |
121 |
gctaaagttatatgcatgggaaatgcattttaaaaattccattgaaatcctaagaattgttgaagaaaaattgttatcttcagtgctattacaaaaggca |
220 |
Q |
| |
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||||||| ||||||||||||||| |||||||||| ||| || |||| |||||| ||| ||| |||||| ||| | |||||||| || ||||||| |
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| T |
11663010 |
gctaaagctatatgcatgggaaacacattttaaaagttctatagaaaaattaagaaatgtggaactcaaattgctatatgcagtgctactaagaaaggca |
11663109 |
T |
|
| Q |
221 |
taca |
224 |
Q |
| |
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|||| |
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|
| T |
11663110 |
taca |
11663113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 11632137 - 11632002
Alignment:
| Q |
22 |
tccactagcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaaagtg |
121 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||| | ||||| |||||||| || || || |||||||| |||||||| ||||| ||||||||| |
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| T |
11632137 |
tccactagcaaagttacaacacaagtatcagagcaaacttatggtggcacaagatgagagattaaaggctagttcggaggctcttgtgaatatgaaagtg |
11632038 |
T |
|
| Q |
122 |
ctaaagttatatgcatgggaaatgcattttaaaaat |
157 |
Q |
| |
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| ||||| ||||| ||||||| |||||||||||| |
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| T |
11632037 |
ttgaagttgtatgcgtgggaaaatcattttaaaaat |
11632002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 11674159 - 11674018
Alignment:
| Q |
21 |
ctccactagcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaaagt |
120 |
Q |
| |
|
|||| ||||||||| ||||||| |||| || || ||||| | ||||| |||||||| || || ||||| |||||||||||||| ||||| |||||||| |
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| T |
11674159 |
ctccgctagcaaagctacaacacaagtttcagagcaaactaatggtggcgcaagatgagagattaaaagcgagttctgaggctcttgtgaatatgaaagt |
11674060 |
T |
|
| Q |
121 |
gctaaagttatatgcatgggaaatgcattttaaaaattccat |
162 |
Q |
| |
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| | ||| ||||||||||||||| ||||||||||||||||| |
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| T |
11674059 |
gttgaagctatatgcatgggaaacccattttaaaaattccat |
11674018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 11710683 - 11710547
Alignment:
| Q |
21 |
ctccactagcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaaagt |
120 |
Q |
| |
|
||||| |||||||||||||| | |||| || || ||||| | ||||| ||||| || || ||||| |||||||| |||||||| ||||| |||||||| |
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|
| T |
11710683 |
ctccaatagcaaagttacaaaacaagtttcagagcgaacttatggtggcacaagacgagagattgaaggctagttccgaggctcttgtgaatatgaaagt |
11710584 |
T |
|
| Q |
121 |
gctaaagttatatgcatgggaaatgcattttaaaaat |
157 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||| |
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|
| T |
11710583 |
gctcaagttatatgcatgggaaaaccattttaaaaat |
11710547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 11618093 - 11618230
Alignment:
| Q |
20 |
gctccactagcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaaag |
119 |
Q |
| |
|
|||||||||||||| |||||||| |||| || || ||||| | ||||| |||||||| || || || || ||||| |||||||| ||||| ||||||| |
|
|
| T |
11618093 |
gctccactagcaaacttacaacacaagtttcaaacccaacttatggtggcgcaagatgagagattaaaggcgagttcggaggctcttgtgaatatgaaag |
11618192 |
T |
|
| Q |
120 |
tgctaaagttatatgcatgggaaatgcattttaaaaat |
157 |
Q |
| |
|
|| | ||| ||||||||||||||| |||||||||||| |
|
|
| T |
11618193 |
tgttgaagctatatgcatgggaaacacattttaaaaat |
11618230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 44811503 - 44811617
Alignment:
| Q |
29 |
gcaaagttacaacataagtatctaagtaaacttctagtggcccaagatgaaaggttgaaagctagttctgaggctctggtgaacatgaaagtgctaaagt |
128 |
Q |
| |
|
|||||||||||||| |||| || ||| |||||| | || || |||||||| || ||||| |||| |||||||||||| ||||| ||||| ||||| |||| |
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| T |
44811503 |
gcaaagttacaacacaagtttcaaagcaaacttatggtagcacaagatgagagattgaaggctacttctgaggctcttgtgaatatgaaggtgctgaagt |
44811602 |
T |
|
| Q |
129 |
tatatgcatgggaaa |
143 |
Q |
| |
|
||||||||||||||| |
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|
| T |
44811603 |
tatatgcatgggaaa |
44811617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 8995 - 8951
Alignment:
| Q |
113 |
atgaaagtgctaaagttatatgcatgggaaatgcattttaaaaat |
157 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||||||||||| |
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|
| T |
8995 |
atgaaagtgttgaagttatatgcatgggaaacacattttaaaaat |
8951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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