View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0945_high_47 (Length: 252)
Name: NF0945_high_47
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_high_47 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 6953939 - 6954180
Alignment:
| Q |
11 |
cacagataatgttttcaatgaggttttggatgctagcttttgtgttgatcatatcagaaatttttggagcttctttgaatatagttgaaggaaagcctca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6953939 |
cacagataatgttttcaatgaggttttggatgctagcttttgtgttgatcatatcagaaatttttggagcttctttgaatatagttgaaggaaagcctca |
6954038 |
T |
|
| Q |
111 |
aaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaatagatcagagtttctattagaggttagcaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954039 |
aaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaatagatcagagtttctattagaggttagcaaa |
6954138 |
T |
|
| Q |
211 |
actaaccaaattgaaaaagtttccttaattcactttttcttt |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954139 |
actaaccaaattgaaaaagtttccttaattcactttttcttt |
6954180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 6963492 - 6963709
Alignment:
| Q |
13 |
cagataatgttttcaatgaggttttggatgctagcttttgtgttgatc-----atatcagaaatttttggagcttctttgaatatagttgaaggaaagcc |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6963492 |
cagagaatgttttcaatgaggttttggatgctagcttttgtgttgatcagatcatatcagaaatttttggagcttctttgaatatagttgaaggaaagcc |
6963591 |
T |
|
| Q |
108 |
tcaaaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaatagatcagagtttctattagaggttagc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
6963592 |
tcaaaggattcttttggatacagatgttgatactgatgatttatttgcattgctatatcttttgaagctcaatagattagaatttcaattagaggttagc |
6963691 |
T |
|
| Q |
208 |
aaaactaaccaaattgaa |
225 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
6963692 |
aaaacaaaccaaattgaa |
6963709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 18134710 - 18134631
Alignment:
| Q |
100 |
ggaaagcctcaaaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaa |
179 |
Q |
| |
|
|||||||||||| | ||| || ||||||| |||||||||||||||||||||||||| || || |||||| | |||||||| |
|
|
| T |
18134710 |
ggaaagcctcaacgaattgttgtggatactgatgttgatactgatgatttatttgctctgctttatcttcttaagctcaa |
18134631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 49121919 - 49121840
Alignment:
| Q |
100 |
ggaaagcctcaaaggattcttttggatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaa |
179 |
Q |
| |
|
|||||||||||| | ||| || ||||||| |||||||||||||||||||||||||| || || |||||| | |||||||| |
|
|
| T |
49121919 |
ggaaagcctcaacgaattgttgtggatactgatgttgatactgatgatttatttgctctgctttatcttcttaagctcaa |
49121840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 49105320 - 49105241
Alignment:
| Q |
124 |
gatacagatgttgatactgatgatttatttgcacttctatatcttttgaagctcaatagatcagagtttctattagaggt |
203 |
Q |
| |
|
||||||||||||| ||| || ||||||||||| || || || ||| | |||||||||| |||||||||| ||||||||| |
|
|
| T |
49105320 |
gatacagatgttgctaccgacgatttatttgctctactctaccttctcaagctcaatacttcagagtttcaattagaggt |
49105241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University