View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_high_49 (Length: 252)
Name: NF0945_high_49
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_high_49 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 26510196 - 26510427
Alignment:
| Q |
19 |
aaaacaacaaataagttaatagactagatatcaaatttagcaaaaagaaaatgtacgcatatttctcccctannnnnnnnnnccgacacatccatgcaat |
118 |
Q |
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| T |
26510196 |
aaaacaacaaataagttaatagactaaatatcaaatttagcaaaaagaaaatgtacgcatatttctcccctattttttatttccgacacatccatgcaat |
26510295 |
T |
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| Q |
119 |
cttcaacaagattattactaattgttgatctaaatttgtctgcgtgtggttataaaatttgttgtcttactcttacctggacaagatttaaagtcagtct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26510296 |
cttcaacaagattattactaattgttgatctaaatttgtctgcgtgtggttctaaaatttgttgtcttactcttacctggacaacatttaaagtcagtct |
26510395 |
T |
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| Q |
219 |
tcactacacgcaagtaagcataaacgactgacac |
252 |
Q |
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||||| |||||||||||||||||||||||||| |
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| T |
26510396 |
tcact--gcgcaagtaagcataaacgactgacac |
26510427 |
T |
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