View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_high_6 (Length: 537)

Name: NF0945_high_6
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_high_6
NF0945_high_6
[»] chr1 (4 HSPs)
chr1 (130-488)||(46755999-46756354)
chr1 (10-53)||(45918361-45918404)
chr1 (52-94)||(46756423-46756465)
chr1 (11-53)||(49881712-49881754)
[»] chr3 (1 HSPs)
chr3 (9-53)||(50241389-50241433)
[»] scaffold0211 (1 HSPs)
scaffold0211 (10-53)||(18586-18629)
[»] chr4 (2 HSPs)
chr4 (10-53)||(314233-314276)
chr4 (10-53)||(6554451-6554494)
[»] chr2 (1 HSPs)
chr2 (10-53)||(31965974-31966017)
[»] scaffold0114 (1 HSPs)
scaffold0114 (14-53)||(36954-36993)
[»] chr8 (1 HSPs)
chr8 (11-52)||(41527164-41527205)
[»] chr5 (1 HSPs)
chr5 (10-53)||(9024862-9024905)
[»] scaffold0284 (1 HSPs)
scaffold0284 (19-53)||(962-996)


Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 130 - 488
Target Start/End: Complemental strand, 46756354 - 46755999
Alignment:
Q  130 tcaccccataaatttagagaacgacttattaaatttaaacccaaataatataatagtaacatgtattttacagtacacaactcggttatatgcataaata 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46756354 tcaccccataaatttagagaacgacttattaaatttaaacccaaataatataatagtaacatgtattttacagtacacaactcagttatatgcataaata 46756255  T
Q  230 ataaacgaagaaataaagctatattatgtatttccaattaagtcgagtttcacttatagttgatatataatacatgctctccaagtacaa--acgaccac 327  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  46756254 ataaacgaagaaataaagctatattatgtatttccaattaagtcaagtttcacttatagttgatatataatacatgctctccaagtacaaacacgaccac 46756155  T
Q  328 actattatgtagttgtccattacaagtctttatttaaccttcgaggacaatcacgaaatgaaataacattcgatttaaccctcatgttatgttatgtgaa 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||    
T  46756154 actattatgtagttgtccattacaagtctttatttaaccttcgaggacaatcacgaaatgaaataacattctatttaaccctc-----atgttatgtgaa 46756060  T
Q  428 cataaaaatgtagaaacagttaactaaccaccttataagaaagcttctctttcagccgcag 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46756059 cataaaaatgtagaaacagttaactaaccaccttataagaaagcttctctatcagccgcag 46755999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 45918404 - 45918361
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  45918404 taactaacctttttaaacatatggtgtcttcatttgatattatt 45918361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 46756465 - 46756423
Alignment:
Q  52 ttcgcataaaaagggggaagtaaattatgacatatataaattg 94  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  46756465 ttcgcataaaaaaggggaagtaaattatgacatatataaattg 46756423  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 49881712 - 49881754
Alignment:
Q  11 aaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  49881712 aaccaaccgttttaaacgtatggtgtcttcatttgatattatt 49881754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 50241389 - 50241433
Alignment:
Q  9 ttaaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50241389 ttaaccaacctttttaaacatatggtgtcttcatttgatattatt 50241433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 18629 - 18586
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18629 taaccaacctttttaaacatatggtgtcttcatttgatattatt 18586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 314233 - 314276
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  314233 taaccaacctttttaaacatatggtgtcttcatttgatattatt 314276  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 6554451 - 6554494
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  6554451 taactaacctttttaaatatatggtgtcttcatttgatattatt 6554494  T

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Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 31966017 - 31965974
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31966017 taaccaacctttttaaacatatggtgtcttcatttgatattatt 31965974  T

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Target: scaffold0114 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 36954 - 36993
Alignment:
Q  14 caacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36954 caacctttttaaacatatggtgtcttcatttgatattatt 36993  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 41527205 - 41527164
Alignment:
Q  11 aaccaacctttttaaacatatggtgtcttcatttgatattat 52  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  41527205 aaccaacctttttaaatatatggtgtcttcatttgatattat 41527164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 9024862 - 9024905
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  9024862 taaccaacttttttaaacatatggtgtcttcgtttgatattatt 9024905  T

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Target: scaffold0284 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 996 - 962
Alignment:
Q  19 tttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||| |||||||||||||    
T  996 tttttaaacatatggtgtcttgatttgatattatt 962  T

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