View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0945_high_7 (Length: 513)

Name: NF0945_high_7
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0945_high_7
NF0945_high_7
[»] chr8 (2 HSPs)
chr8 (146-421)||(11582293-11582566)
chr8 (11-52)||(41527164-41527205)
[»] chr3 (2 HSPs)
chr3 (424-504)||(21871337-21871417)
chr3 (9-53)||(50241389-50241433)
[»] scaffold0211 (1 HSPs)
scaffold0211 (10-53)||(18586-18629)
[»] chr4 (2 HSPs)
chr4 (10-53)||(314233-314276)
chr4 (10-53)||(6554451-6554494)
[»] chr2 (1 HSPs)
chr2 (10-53)||(31965974-31966017)
[»] scaffold0114 (1 HSPs)
scaffold0114 (14-53)||(36954-36993)
[»] chr1 (2 HSPs)
chr1 (10-53)||(45918361-45918404)
chr1 (11-53)||(49881712-49881754)
[»] chr5 (1 HSPs)
chr5 (10-53)||(9024862-9024905)
[»] scaffold0284 (1 HSPs)
scaffold0284 (19-53)||(962-996)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 146 - 421
Target Start/End: Complemental strand, 11582566 - 11582293
Alignment:
Q  146 tttcacttcttattctaac---attagtggctacatgaagataggaagcagaagttgccaaagcataagatagaaatgctacatgctcacttctagtgac 242  Q
    |||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11582566 tttcacttcttattctaacgtcattagtggctacatgaagaaaggaagcagaagttgccaaagcataagatagaaatgatacatgctcacttctagtgac 11582467  T
Q  243 cttaaaaacattgccatcgtggaagcaagccctctaaataatcacacatgtacttggtgatttgttggaaatctcagcaagctcaatggagagcaaagac 342  Q
    ||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11582466 cttaaaaacattgcca----------------tctaaataatcacacatgtacttggtgatttgttggaaatctcagcaagctcaatggagagcaaagac 11582383  T
Q  343 tttccccttatcaaaatg-----------actcttaacaatttgaagctctcttttgatggaatgttgcattagtgtaaagtgggtgatt 421  Q
    ||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11582382 tttccccttatcaaaatgtcaccacaatcactcttaacaatttgaagctctcttttgatggaatgttgcattagtgtaaagtgggtgatt 11582293  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 41527205 - 41527164
Alignment:
Q  11 aaccaacctttttaaacatatggtgtcttcatttgatattat 52  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  41527205 aaccaacctttttaaatatatggtgtcttcatttgatattat 41527164  T

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Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 424 - 504
Target Start/End: Complemental strand, 21871417 - 21871337
Alignment:
Q  424 tggaaatttgttgggaatttacagttgcttaatcttcttaatattgcttgggagggctgcatttgatttccccctctctgc 504  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21871417 tggaaacttgctgggaatttacagttgcttaatcttcttaatattgcttgggagggctgcatttgttttccccctctctgc 21871337  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 50241389 - 50241433
Alignment:
Q  9 ttaaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50241389 ttaaccaacctttttaaacatatggtgtcttcatttgatattatt 50241433  T

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Target: scaffold0211 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 18629 - 18586
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18629 taaccaacctttttaaacatatggtgtcttcatttgatattatt 18586  T

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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 314233 - 314276
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  314233 taaccaacctttttaaacatatggtgtcttcatttgatattatt 314276  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 6554451 - 6554494
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||| |||||||||||| ||||||||||||||||||||||||||    
T  6554451 taactaacctttttaaatatatggtgtcttcatttgatattatt 6554494  T

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Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 31966017 - 31965974
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31966017 taaccaacctttttaaacatatggtgtcttcatttgatattatt 31965974  T

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Target: scaffold0114 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 36954 - 36993
Alignment:
Q  14 caacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36954 caacctttttaaacatatggtgtcttcatttgatattatt 36993  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 45918404 - 45918361
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  45918404 taactaacctttttaaacatatggtgtcttcatttgatattatt 45918361  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 49881712 - 49881754
Alignment:
Q  11 aaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  49881712 aaccaaccgttttaaacgtatggtgtcttcatttgatattatt 49881754  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 9024862 - 9024905
Alignment:
Q  10 taaccaacctttttaaacatatggtgtcttcatttgatattatt 53  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  9024862 taaccaacttttttaaacatatggtgtcttcgtttgatattatt 9024905  T

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Target: scaffold0284 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 996 - 962
Alignment:
Q  19 tttttaaacatatggtgtcttcatttgatattatt 53  Q
    ||||||||||||||||||||| |||||||||||||    
T  996 tttttaaacatatggtgtcttgatttgatattatt 962  T

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