View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_11 (Length: 497)
Name: NF0945_low_11
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 110 - 490
Target Start/End: Complemental strand, 14811675 - 14811296
Alignment:
| Q |
110 |
gttcgtagggcaacaagattcaggcaacaatcccatcctagtgtgttggccgcttaggacctttgttcttcgggcatttagtgtatgttattaccacttt |
209 |
Q |
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| T |
14811675 |
gttcgtagggcaacaagattcaggcaacaatcccatcctagtgtgttggccgcttaggacctttgttcttcgggcatttagtgtatgttatcaccacttt |
14811576 |
T |
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| Q |
210 |
caatgttgttgatagtgttaatggctcctttgccactggtaacaaaaagaggattatgcttaggttgggtacaagggttgtaatggatgatagctttctc |
309 |
Q |
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| T |
14811575 |
caatgttgttgatagtgttaatggctcctttgccactggtaacagaaagagcattatgcttaggttgggtacaagggttgtaatggatgatagctttctc |
14811476 |
T |
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| Q |
310 |
attcataagtatgggttgactttgcttcgctctgatgagatcaaaaggccacgttttgatcccgctcgattggttggtatctgtttcgtttttgtagtct |
409 |
Q |
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| T |
14811475 |
attcataagtatgggttgacttcgcttcgctctgatgagatcaaaaggccacgttttgatcccgctcggttggttggtatctgtttcgtttttgtagtct |
14811376 |
T |
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| Q |
410 |
ggtttgctttgtcttactgttcatttacattttatgtagtctctgatctcactgtgattccgtttttcaagatattgttgg |
490 |
Q |
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| T |
14811375 |
ggtttgctttgtcttactgtttatttaca-tttatttagtctctgatctcactgtgattccgtttttaaagattttgttgg |
14811296 |
T |
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