View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_13 (Length: 496)
Name: NF0945_low_13
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 33398956 - 33399410
Alignment:
| Q |
13 |
aatatcaattaagcattaatgttacttttcttatattatactcttaactcttactatcttctttctgnnnnnnnnnnnnaatatatatttctcatgacat |
112 |
Q |
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| T |
33398956 |
aatatcaattaagcattaatgttacttttcttatattatacttttaactcttactatcttctttctattatttttttttaatttatatttctcatgacat |
33399055 |
T |
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| Q |
113 |
aaatgaaggata-ttttataagataattcataatttctannnnnnnacacagaattaattacattgcttactttgtaccaaaactaatcaatatggctta |
211 |
Q |
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| T |
33399056 |
aaatgaaggatagttttataaaataattcataatttctatttttt-acacagaattaattacattgcttactttgtaccaaaactaatcaatatggctta |
33399154 |
T |
|
| Q |
212 |
taatttaagagggagagagtataagttagttttgaaaagtggattttcattaaatttacccccacagcacaagatgtgcataaatggagggaaataacat |
311 |
Q |
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| T |
33399155 |
taatttaagagggagagagtataagttagttttgaaaagtggattttcattaaatttactcccacagcacaagatgtgcataaatggagggaaataacat |
33399254 |
T |
|
| Q |
312 |
cagtccacatgctttacacggtacaaatgtaaccaaacaaaacaacatatacccaaggctacattcattgtgaggtacatctgtgtaactaataagaacc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
33399255 |
cagtccacatgctttacacggtacaaatgtaaccaaacaaaacaacatatacccaaggctacattcattgtaaagtacatctgtgtaactaataagaacc |
33399354 |
T |
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| Q |
412 |
atctaatgcataattatgcagaagatggttttcaattctgcaccaacacttgcatc |
467 |
Q |
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| T |
33399355 |
atctaatgcataattatgcagaagatggttttcaattctgcaccaacacttgcatc |
33399410 |
T |
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