View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_15 (Length: 484)
Name: NF0945_low_15
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 2162762 - 2162625
Alignment:
| Q |
59 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattatatcgatgctcaagtgattgatgtagaacaaccaactaattcctctaatcca |
158 |
Q |
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| T |
2162762 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattatagcgatgctcaagtgattgatgtagaacaacctactaattcctctaatcca |
2162663 |
T |
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| Q |
159 |
agtaaccaaacaaggtactcaatccttttaattacctt |
196 |
Q |
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| T |
2162662 |
aataaccaaacaaggtactcaatccttttcattacctt |
2162625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 59 - 328
Target Start/End: Complemental strand, 2164751 - 2164497
Alignment:
| Q |
59 |
taattcaaatatgtatatgtatctcatgaatatttatacacatcattat---atcgatgctcaagtgattgatgtagaacaaccaactaattcctctaat |
155 |
Q |
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| T |
2164751 |
taattgaaatatgtatatgtatctcatgaaaatttatacacattattattacagcgatgctcaagggattacggtagaacaaccaactaattcctctaat |
2164652 |
T |
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| Q |
156 |
ccaagtaaccaaacaaggtactcaatccttttaattaccttctgaaaattattatttttctttgtggtttttaattactttcttgtagctcaaaacnnnn |
255 |
Q |
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| T |
2164651 |
ccaaataaccaaacaaggtactcaatccttttcatgatctt----taatta----ctttctttttggtttttaattactttcttgtggttcaaaacaaaa |
2164560 |
T |
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| Q |
256 |
nnnngctcataaaacaatgtatgtttgtatctaatcttaatctcatgaacacaatgataaatatttaggtatc |
328 |
Q |
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| T |
2164559 |
aaaagctcataaaataatgta----tgtatc------taatctcatgaacacaatgataaatatttaggtatc |
2164497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 373 - 434
Target Start/End: Complemental strand, 2164477 - 2164416
Alignment:
| Q |
373 |
atattatgcttgatattgtttatcttccctgccctaaagatgtcatctcatggtggtaaatt |
434 |
Q |
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| T |
2164477 |
atattatgcttgatattgattatcttccctgccctaaagatgtcatcttatgatggtaaatt |
2164416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 419
Target Start/End: Complemental strand, 2162264 - 2162218
Alignment:
| Q |
373 |
atattatgcttgatattgtttatcttccctgccctaaagatgtcatc |
419 |
Q |
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| T |
2162264 |
atattatgcttgctgttgattatcttccctgcactaaagatgtcatc |
2162218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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