View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0945_low_16 (Length: 450)
Name: NF0945_low_16
Description: NF0945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0945_low_16 |
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| [»] scaffold0727 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 47900828 - 47900418
Alignment:
| Q |
11 |
acaatattaaaacaaacgttgttcttgttaacttcttctctctaattcttcctcgtatttcgacaacacttccacaccaatcannnnnnncacctctctc |
110 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47900828 |
acaacattaaaacaaacgttgttcttgctaacttcttctctctaattcttcctcgtatttcgacaacacttccacaccaatcatttttttcacctctctc |
47900729 |
T |
|
| Q |
111 |
tgccggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccacatggaggtttcatacgtgtcaccggaaagctctaa |
210 |
Q |
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| T |
47900728 |
tgccggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccacatggaggtttcatacgtgtcaccggaaagctctaa |
47900629 |
T |
|
| Q |
211 |
ggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaaacgtagtgag |
310 |
Q |
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| T |
47900628 |
ggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaaacgtagtgag |
47900529 |
T |
|
| Q |
311 |
tctcaaagttctatcaatgaagataatgaagttggcatggaactcatggaaattggagcagaaagaacaaaaaatgtgttgattctcatgagtgatactg |
410 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47900528 |
tctcaaagttctatcaatgaagataatgaaggtggcatggaactcatggaaattggagcagaaagaacaaaaaatgtgttgattctcatgagtgatactg |
47900429 |
T |
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| Q |
411 |
gtggtggacat |
421 |
Q |
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| T |
47900428 |
gtggtggacat |
47900418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 114 - 310
Target Start/End: Original strand, 23554415 - 23554623
Alignment:
| Q |
114 |
cggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccac------------atggaggtttcatacgtgtcaccgga |
201 |
Q |
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| T |
23554415 |
cggagaaatcttgttccgatggtggcggcaacaaggtttgtttgactgttaggtgtgtccactttttcggacacatggaggtttcatatgttacacgaga |
23554514 |
T |
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| Q |
202 |
aagctctaaggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaaa |
301 |
Q |
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| T |
23554515 |
aagctctaaggttgtatcaccaagaacaccaagtaagtctatagtggaaaaagtgtttggaaaatcgtatttcattagagggagtggaagcttcaagaag |
23554614 |
T |
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| Q |
302 |
cgtagtgag |
310 |
Q |
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| T |
23554615 |
catagtgag |
23554623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0727 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0727
Description:
Target: scaffold0727; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 114 - 310
Target Start/End: Original strand, 6536 - 6744
Alignment:
| Q |
114 |
cggagaaaccttgttccggtggtggcgggaacgaggtttgtttgaccgttaggtgtgtccac------------atggaggtttcatacgtgtcaccgga |
201 |
Q |
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|||||||| ||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||||||| || ||| || |
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| T |
6536 |
cggagaaatcttgttccgatggtggcggcaacaaggtttgtttgactgttaggtgtgtccactttttcggacacatggaggtttcatatgttacacgaga |
6635 |
T |
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| Q |
202 |
aagctctaaggttgtgtcaccaagaacactaagaaagtctatagtggaaaaagtgtttggaaaatcgtattccattaaaggcagtggaagcttcaagaaa |
301 |
Q |
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||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
6636 |
aagctctaaggttgtatcaccaagaacaccaagtaagtctatagtggaaaaagtgtttggaaaatcgtatttcattagagggagtggaagcttcaagaag |
6735 |
T |
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| Q |
302 |
cgtagtgag |
310 |
Q |
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| T |
6736 |
catagtgag |
6744 |
T |
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